Evidence map›Paper›PMID 21304673›Full record

ArticleStandards in genomic sciences2010

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA).

Konstantinos Mavromatis, Johannes Sikorski, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan and 29 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  3. Article
  4. Article
  5. Review
  6. Review
  7. Glycoside hydrolase gene transcription byBiotechnology for biofuels · 2018
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Konstantinos Mavromatis
Johannes Sikorski
Alla Lapidus
Tijana Glavina Del Rio
Alex Copeland
Hope Tice
Jan-Fang Cheng
Susan Lucas
Feng Chen
Matt Nolan
David Bruce
Lynne Goodwin
Sam Pitluck
Natalia Ivanova
Galina Ovchinnikova
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D Jeffries
Patrick Chain
Linda Meincke
David Sims
Olga Chertkov
Cliff Han
Thomas Brettin
John C Detter
Claudia Wahrenburg
Manfred Rohde
Rüdiger Pukall
Markus Göker
Jim Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Hans-Peter Klenk
Nikos C Kyrpides

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alicyclobacillus acidocaldarius (Darland and Brock 1971) is the type species of the larger of the two genera in the bacillal family 'Alicyclobacillaceae'. A. acidocaldarius is a free-living and non-pathogenic organism, but may also be associated with food and fruit spoilage. Due to its acidophilic nature, several enzymes from this species have since long been subjected to detailed molecular and biochemical studies. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of the family 'Alicyclobacillaceae'. The 3,205,686 bp long genome (chromosome and three plasmids) with its 3,153 protein-coding and 82 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

acidophilicaerobicfood spoilageGEBAnon-motile but encodes flagellar genesnon-pathogenicthermophile

Identifiers

PMID21304673
PMCPMC3035248

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.