Evidence map›Paper›PMID 21304516›Full record

ArticleNature communications2011

Chromatin remodelling complex dosage modulates transcription factor function in heart development.

Jun K Takeuchi, Xin Lou, Jeffrey M Alexander, Hiroe Sugizaki, Paul Delgado-Olguín, Alisha K Holloway, Alessandro D Mori, John N Wylie, Chantilly Munson, Yonghong Zhu and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 209 citations in OpenAlex.

  1. Article
  2. Article
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  4. SMARCD1 and Its Functional Relevance in SWI/SNF and Cancer.International journal of molecular sciences · 2026
    Review
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69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 5 countries.

Jun K TakeuchiGladstone Institute of Cardiovascular Disease, San Francisco, California 94158, USA.
Xin Lou
Jeffrey M Alexander
Hiroe Sugizaki
Paul Delgado-Olguín
Alisha K Holloway
Alessandro D Mori
John N Wylie
Chantilly Munson
Yonghong Zhu
Yu-Qing Zhou
Ru-Fang Yeh
R Mark Henkelman
Richard P Harvey
Daniel Metzger
Pierre Chambon
Didier Y R Stainier
Katherine S Pollard
Ian C Scott
Benoit G Bruneau
Gladstone Institutes · USHospital for Sick Children · CAUniversity of California, San Francisco · USUniversité de Strasbourg · FRThe University of Tokyo · JPUniversity of Toronto · CAUNSW Sydney · AU

Funding

MOLECULAR GENETICS OF CARDIAC CELL DIFFERENTIATIONR01HL054737 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COUGHLIN, SHAUN R. · 1996 to 2015
$5.4M
Chromatin remodeling complexes in heart developmentR01HL085860 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN · 2006 to 2010
$2.3M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR018928 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI MAHLEY, ROBERT W. · 2003 to 2003
$2.1M
CIHR 86663NCRR NIH HHS C06 RR018928NHLBI NIH HHS R01 HL054737NHLBI NIH HHS R01 HL085860NHLBI NIH HHS R01 HL54737
6 · The paper itself

Abstract

Dominant mutations in cardiac transcription factor genes cause human inherited congenital heart defects (CHDs); however, their molecular basis is not understood. Interactions between transcription factors and the Brg1/Brm-associated factor (BAF) chromatin remodelling complex suggest potential mechanisms; however, the role of BAF complexes in cardiogenesis is not known. In this study, we show that dosage of Brg1 is critical for mouse and zebrafish cardiogenesis. Disrupting the balance between Brg1 and disease-causing cardiac transcription factors, including Tbx5, Tbx20 and Nkx2-5, causes severe cardiac anomalies, revealing an essential allelic balance between Brg1 and these cardiac transcription factor genes. This suggests that the relative levels of transcription factors and BAF complexes are important for heart development, which is supported by reduced occupancy of Brg1 at cardiac gene promoters in Tbx5 haploinsufficient hearts. Our results reveal complex dosage-sensitive interdependence between transcription factors and BAF complexes, providing a potential mechanism underlying transcription factor haploinsufficiency, with implications for multigenic inheritance of CHDs.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsChromatin ImmunoprecipitationDNA HelicasesDNA PrimersEchocardiographyElectrocardiographyGene DosageHaploinsufficiencyHeartHeart Defects, CongenitalHomeobox Protein Nkx-2.5Homeodomain ProteinsMiceMicroarray AnalysisMorphogenesisAdaptor Proteins, Signal TransducingDNA HelicasesDNA PrimersHomeobox Protein Nkx-2.5Homeodomain ProteinsMultiprotein ComplexesNkx2-5 protein, mouseNuclear ProteinsSmarca2 protein, mousesmarca4a protein, zebrafishSmarca4 protein, mouseT-Box Domain ProteinsT-box transcription factor 5Tbx20 protein, mouseTranscription FactorsZebrafish Proteins

Identifiers

PMID21304516
PMCPMC3096875
OpenAlexW2114430445

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.