Evidence map›Paper›PMID 21303904›Full record

ArticleThe Journal of biological chemistry2011

Two pathways of sphingolipid biosynthesis are separated in the yeast Pichia pastoris.

Philipp Ternes, Tobias Wobbe, Marnie Schwarz, Sandra Albrecht, Kirstin Feussner, Isabelle Riezman, James M Cregg, Ernst Heinz, Howard Riezman, Ivo Feussner and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
  2. Review
  3. The antimicrobial activity of ETD151 defensin is dictated by the presence of glycosphingolipids in the targeted organisms.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Diversity in sphingolipid metabolism across land plants.Journal of experimental botany · 2022
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. International journal of molecular sciences · 2020
    Article
  13. Frontiers in microbiology · 2020
    Review
  14. Plant-UniquePlants (Basel, Switzerland) · 2019
    Article
  15. Article
  16. Sphingolipid biosynthesis in man and microbes.Natural product reports · 2018
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Philipp TernesDepartment of Plant Biochemistry, Albrecht von Haller Institute for Plant Sciences, Georg August University, Göttingen, Germany.
Tobias Wobbe
Marnie Schwarz
Sandra Albrecht
Kirstin Feussner
Isabelle Riezman
James M Cregg
Ernst Heinz
Howard Riezman
Ivo Feussner
Dirk Warnecke
Universität Hamburg · DEUniversity of Geneva · CHKeck Graduate Institute · USUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although the yeast Saccharomyces cerevisiae has only one sphingolipid class with a head group based on phosphoinositol, the yeast Pichia pastoris as well as many other fungi have a second class, glucosylceramide, which has a glucose head group. These two sphingolipid classes are in addition distinguished by a characteristic structure of their ceramide backbones. Here, we investigate the mechanisms controlling substrate entry into the glucosylceramide branch of the pathway. By a combination of enzymatic in vitro studies and lipid analysis of genetically engineered yeast strains, we show that the ceramide synthase Bar1p occupies a key branching point in sphingolipid biosynthesis in P. pastoris. By preferring dihydroxy sphingoid bases and C(16)/C(18) acyl-coenzyme A as substrates, Bar1p produces a structurally well defined group of ceramide species, which is the exclusive precursor for glucosylceramide biosynthesis. Correlating with the absence of glucosylceramide in this yeast, a gene encoding Bar1p is missing in S. cerevisiae. We could not successfully investigate the second ceramide synthase in P. pastoris that is orthologous to S. cerevisiae Lag1p/Lac1p. By analyzing the ceramide and glucosylceramide species in a collection of P. pastoris knock-out strains in which individual genes encoding enzymes involved in glucosylceramide biosynthesis were systematically deleted, we show that the ceramide species produced by Bar1p have to be modified by two additional enzymes, sphingolipid Δ4-desaturase and fatty acid α-hydroxylase, before the final addition of the glucose head group by the glucosylceramide synthase. Together, this set of four enzymes specifically defines the pathway leading to glucosylceramide biosynthesis.

Indexed as

Fungal ProteinsGenes, FungalOxidoreductasesPichiaSaccharomyces cerevisiaeSpecies SpecificitySphingolipidsdihydroceramide desaturaseFungal ProteinsOxidoreductasesSphingolipids

Identifiers

PMID21303904
PMCPMC3064196
OpenAlexW2166616921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.