Evidence map›Paper›PMID 21301103›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2011

Purification, crystallization and preliminary crystallographic analysis of the SH2 domain of IL-2-inducible T-cell kinase.

Raji E Joseph, Nathaniel D Ginder, Julie A Hoy, Jay C Nix, Richard B Honzatko, Amy H Andreotti

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Structure of the interleukin-2 tyrosine kinase Src homology 2 domain; comparison between X-ray and NMR-derived structures.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Raji E JosephDepartment of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Nathaniel D Ginder
Julie A Hoy
Jay C Nix
Richard B Honzatko
Amy H Andreotti

Funding

STRUCTURAL STUDIES OF A T CELL SPECIFIC TYROSINE KINASER01AI043957 · NIAID · IOWA STATE UNIVERSITY · PI AMY H ANDREOTTI, LESLIE JOAN BERG · 1999 to 2026
$9.5M
REGULATORY ENZYMES OF GLYCOLYSIS AND GLUCONEOGENESISR01NS010546 · NINDS · IOWA STATE UNIVERSITY · PI HONZATKO, RICHARD B · 1985 to 2011
$3.6M
Regulation of T Cell Signaling: Structural Studies of PLCgamma1R01AI075150 · NIAID · IOWA STATE UNIVERSITY · PI ANDREOTTI, AMY H · 2008 to 2012
$1.6M
Regulatory Enzymes of Glycolysis and GluconeogenesisR56NS010546 · NINDS · IOWA STATE UNIVERSITY · PI FROMM, HERBERT JEROME · 2007 to 2007
$358k
TARGETING OF PROTEINS TO THE NEUROMUSCULAR JUNCTIONF32NS010546 · NINDS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KAMMESHEIDT, ANJA · 1997 to 1999
–
NIAID NIH HHS AI043957NIAID NIH HHS AI075150NIAID NIH HHS R01 AI043957NIAID NIH HHS R01 AI075150NINDS NIH HHS F32 NS010546NINDS NIH HHS NS010546NINDS NIH HHS R01 NS010546NINDS NIH HHS R56 NS010546
6 · The paper itself

Abstract

Proline is a unique amino acid owing to the relatively small energy difference between the cis and trans conformations of its peptide bond. The X-Pro imide bond readily undergoes cis-trans isomerization in the context of short peptides as well as some proteins. However, the direct detection of cis-trans proline isomerization in folded proteins is technically challenging. NMR spectroscopy is well suited to the direct detection of proline isomerization in folded proteins. It is less clear how well X-ray crystallography can reveal this conformational exchange event in folded proteins. Conformational heterogeneity owing to cis-trans proline isomerization in the Src homology 2 (SH2) domain of the IL-2-inducible T-cell kinase (ITK) has been extensively characterized by NMR. Using the ITK SH2 domain as a test system, an attempt was made to determine whether proline isomerization could be detected in a crystal structure of the ITK SH2 domain. As a first step towards this goal, the purification, crystallization and preliminary characterization of the ITK SH2 domain are described.

Indexed as

src Homology DomainsAnimalsCrystallizationCrystallography, X-RayMiceMolecular ConformationPeptidesProlineProtein-Tyrosine KinasesX-Ray Diffractionemt protein-tyrosine kinasePeptidesProlineProtein-Tyrosine Kinases

Identifiers

PMID21301103
PMCPMC3034625

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.