Evidence map›Paper›PMID 21301083›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2011

Structure of the putative dihydroorotate dehydrogenase from Streptococcus mutans.

Ying Liu, Zeng Qiang Gao, Chao Pei Liu, Jian Hua Xu, Lan Fen Li, Chao Neng Ji, Xiao Dong Su, Yu Hui Dong

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Ying LiuDepartment of Genetics, School of Life Science, Fudan University, Shanghai, People's Republic of China.
Zeng Qiang Gao
Chao Pei Liu
Jian Hua Xu
Lan Fen Li
Chao Neng Ji
Xiao Dong Su
Yu Hui Dong
Chinese Academy of Sciences · CNFudan University · CNPeking University · CNInstitute of High Energy Physics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus mutans is one of the pathogenic species involved in dental caries, especially in the initiation and development stages. Here, the crystal structure of SMU.595, a putative dihydroorotate dehydrogenase (DHOD) from S. mutans, is reported at 2.4 Å resolution. DHOD is a flavin mononucleotide-containing enzyme which catalyzes the oxidation of L-dihydroorotate to orotate, which is the fourth step and the only redox reaction in the de novo biosynthesis of pyrimidine nucleotides. The reductive lysine-methylation procedure was applied in order to improve the diffraction qualities of the crystals. Analysis of the S. mutans DHOD crystal structure shows that this enzyme is a class 1A DHOD and also suggests potential sites that could be exploited for the design of highly specific inhibitors using the structure-based chemotherapeutic design technique.

Indexed as

Amino Acid SequenceBinding SitesCatalysisConserved SequenceCrystallography, X-RayDental CariesDihydroorotate DehydrogenaseDimerizationEscherichia coliFlavin MononucleotideHistidineHumansHydrophobic and Hydrophilic InteractionsLysineMethylationModels, MolecularDihydroorotate DehydrogenaseFlavin MononucleotideHistidineLysineOrotic AcidOxidoreductases Acting on CH-CH Group DonorsProtein SubunitsPyrimidinesRecombinant Proteins

Identifiers

PMID21301083
PMCPMC3034605
OpenAlexW2141957755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.