Evidence map›Paper›PMID 21298802›Full record

ArticleBiotechnology journal2011

Picoliter DNA sequencing chemistry on an electrowetting-based digital microfluidic platform.

Erin R Ferguson Welch, Yan-You Lin, Andrew Madison, Richard B Fair

Abstract read
In one paragraph

Article in Biotechnology journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Digital Microfluidics for Nucleic Acid Amplification.Sensors (Basel, Switzerland) · 2017
    Review
  8. Article
  9. Droplet microfluidics for chip-based diagnostics.Sensors (Basel, Switzerland) · 2014
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Erin R Ferguson WelchDepartment of Electrical and Computer Engineering, Duke University, Durham, NC, USA. erin.welch@duke.edu
Yan-You Lin
Andrew Madison
Richard B Fair
Duke University · US

Funding

Continuous Sequencing-By-Synthesis Based on a Digital Microfluidic PlatformR01HG004354 · NHGRI · DUKE UNIVERSITY · PI FAIR, RICHARD BARTON · 2007 to 2009
$3.7M
NHGRI NIH HHS R01 HG004354NHGRI NIH HHS R01HG004354-01
6 · The paper itself

Abstract

The results of investigations into performing DNA sequencing chemistry on a picoliter-scale electrowetting digital microfluidic platform are reported. Pyrosequencing utilizes pyrophosphate produced during nucleotide base addition to initiate a process ending with detection through a chemiluminescence reaction using firefly luciferase. The intensity of light produced during the reaction can be quantified to determine the number of bases added to the DNA strand. The logic-based control and discrete fluid droplets of a digital microfluidic device lend themselves well to the pyrosequencing process. Bead-bound DNA is magnetically held in a single location, and wash or reagent droplets added or split from it to circumvent product dilution. Here we discuss the dispensing, control, and magnetic manipulation of the paramagnetic beads used to hold target DNA. We also demonstrate and characterize the picoliter-scale reaction of luciferase with adenosine triphosphate to represent the detection steps of pyrosequencing and all necessary alterations for working on this scale.

Indexed as

ElectrowettingMicrofluidicsSequence Analysis, DNA

Identifiers

PMID21298802
PMCPMC3079775
OpenAlexW2138256617

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.