Evidence map›Paper›PMID 21297580›Full record

ArticleThe EMBO journal2011

Structure of a TCR with high affinity for self-antigen reveals basis for escape from negative selection.

Yiyuan Yin, Yili Li, Melissa C Kerzic, Roland Martin, Roy A Mariuzza

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 87 citations in OpenAlex.

  1. Identification of multiple public TCR repertoires in chronic beryllium disease.Journal of immunology (Baltimore, Md. : 1950) · 2014
    Trial
  2. HLA-DQB1*03:01 strongly affects age of onset of type 1 narcolepsy independently of DQA1 and ethnicity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
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  12. The Many Faces of CD4International journal of molecular sciences · 2020
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. HLA variation and disease.Nature reviews. Immunology · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Yiyuan YinInstitute for Bioscience and Biotechnology Research, University of Maryland, WM Keck Laboratory for Structural Biology, Rockville, MD, USA.
Yili Li
Melissa C Kerzic
Roland Martin
Roy A Mariuzza
Institute for Bioscience and Biotechnology ResearchHamburg Institut (Germany) · DEResearch Institute for Bioscience and Biotechnology · NPUniversity of Maryland, College Park · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR37AI036900 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MARIUZZA, ROY A · 2000 to 2009
$3.2M
Recognition of Self and Mutated Self by Autoimmune and Tumor-Specific TCRsR01AI073654 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI MARIUZZA, ROY A, TOPALIAN, SUZANNE LOUISE · 2008 to 2012
$2.0M
STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR01AI036900 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI MARIUZZA, ROY A · 1995 to 2014
$1.8M
NIAID NIH HHS AI036900NIAID NIH HHS AI073654NIAID NIH HHS R01 AI036900NIAID NIH HHS R01 AI073654NIAID NIH HHS R37 AI036900NIBIB NIH HHS P30 EB009998
6 · The paper itself

Abstract

The failure to eliminate self-reactive T cells during negative selection is a prerequisite for autoimmunity. To escape deletion, autoreactive T-cell receptors (TCRs) may form unstable complexes with self-peptide-MHC by adopting suboptimal binding topologies compared with anti-microbial TCRs. Alternatively, escape can occur by weak binding between self-peptides and MHC. We determined the structure of a human autoimmune TCR (MS2-3C8) bound to a self-peptide from myelin basic protein (MBP) and the multiple sclerosis-associated MHC molecule HLA-DR4. MBP is loosely accommodated in the HLA-DR4-binding groove, accounting for its low affinity. Conversely, MS2-3C8 binds MBP-DR4 as tightly as the most avid anti-microbial TCRs. MS2-3C8 engages self-antigen via a docking mode that resembles the optimal topology of anti-foreign TCRs, but is distinct from that of other autoreactive TCRs. Combined with a unique CDR3β conformation, this docking mode compensates for the weak binding of MBP to HLA-DR4 by maximizing interactions between MS2-3C8 and MBP. Thus, the MS2-3C8-MBP-DR4 complex reveals the basis for an alternative strategy whereby autoreactive T cells escape negative selection, yet retain the ability to initiate autoimmunity.

Indexed as

AutoantigensCrystallography, X-RayHLA-DR4 AntigenHumansModels, MolecularMyelin Basic ProteinProtein BindingProtein ConformationProtein Structure, QuaternaryReceptors, Antigen, T-CellSurface Plasmon ResonanceAutoantigensHLA-DR4 AntigenMyelin Basic ProteinReceptors, Antigen, T-Cell

Identifiers

PMID21297580
PMCPMC3061028
OpenAlexW2132827455

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.