Evidence map›Paper›PMID 21294544›Full record

ArticleJournal of the American Chemical Society2011

G-quadruplex-binding benzo[a]phenoxazines down-regulate c-KIT expression in human gastric carcinoma cells.

Keith I E McLuckie, Zoë A E Waller, Deborah A Sanders, David Alves, Raphaël Rodriguez, Jyotirmayee Dash, Grahame J McKenzie, Ashok R Venkitaraman, Shankar Balasubramanian

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Selective Recognition ofACS medicinal chemistry letters · 2024
    Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Polarizable Molecular Dynamics Simulations of TwoJournal of chemical theory and computation · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Keith I E McLuckieDepartment of Chemistry, University of Cambridge, Cambridge, UK.
Zoë A E Waller
Deborah A Sanders
David Alves
Raphaël Rodriguez
Jyotirmayee Dash
Grahame J McKenzie
Ashok R Venkitaraman
Shankar Balasubramanian

Funding

Biotechnology and Biological Sciences Research Council BB/E012752/1Cancer Research UK 12488Cancer Research UK A5709Medical Research Council G0600332Medical Research Council G0700651Medical Research Council G9900064Medical Research Council MC_U105359877
6 · The paper itself

Abstract

There is considerable interest in the structure and function of G-quadruplex nucleic acid secondary structures, their cellular functions, and their potential as therapeutic targets. G-Quadruplex sequence motifs are prevalent in gene promoter regions and it has been hypothesized that G-quadruplex structure formation is associated with the transcriptional status of the downstream gene. Using a functional cell-based assay, we have identified two novel G-quadruplex ligands that reduce the transcription of a luciferase reporter driven from the G-quadruplex-containing c-KIT promoter. We have further shown that endogenous c-KIT expression in a human gastric carcinoma cell line is also reduced on treatment with these molecules. Biophysical analysis using surface plasmon resonance has shown that these molecules preferentially bind with high affinity to one of the two G-quadruplex sequences in the c-KIT promoter over double-stranded DNA. This work highlights the utility of cell-based reporter assays to identify new G-quadruplex binding molecules that modulate transcription and identifies benzo[a]phenoxazine derivatives as potential antitumor agents.

Indexed as

G-QuadruplexesBinding SitesDown-RegulationGene Expression Regulation, NeoplasticHumansMolecular StructureOxazinesPolymerase Chain ReactionProto-Oncogene Proteins c-kitRNA, MessengerStomach NeoplasmsSurface Plasmon ResonanceTumor Cells, CulturedOxazinesProto-Oncogene Proteins c-kitRNA, Messenger

Identifiers

PMID21294544
PMCPMC3128987

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.