Evidence map›Paper›PMID 21292750›Full record

ArticleMicrobiology (Reading, England)2011

Identification and characterization of the Streptomyces globisporus 1912 regulatory gene lndYR that affects sporulation and antibiotic production.

Bohdan Ostash, Yuriy Rebets, Maksym Myronovskyy, Olga Tsypik, Iryna Ostash, Oleksandr Kulachkovskyy, Yuriy Datsyuk, Tatsunosuke Nakamura, Suzanne Walker, Victor Fedorenko

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. YtrAFrontiers in microbiology · 2019
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Bohdan OstashDepartment of Genetics and Biotechnology, Ivan Franko National University of L'viv, Grushevskogo St 4, L'viv 79005, Ukraine.
Yuriy RebetsDepartment of Microbiology, Niigata University of Pharmacy and Applied Life Sciences, Higashijima 265-1, 956-8603 Niigata, Japan.
Maksym MyronovskyyDepartment of Genetics and Biotechnology, Ivan Franko National University of L'viv, Grushevskogo St 4, L'viv 79005, Ukraine.
Olga TsypikDepartment of Genetics and Biotechnology, Ivan Franko National University of L'viv, Grushevskogo St 4, L'viv 79005, Ukraine.
Iryna OstashDepartment of Genetics and Biotechnology, Ivan Franko National University of L'viv, Grushevskogo St 4, L'viv 79005, Ukraine.
Oleksandr KulachkovskyyDepartment of Genetics and Biotechnology, Ivan Franko National University of L'viv, Grushevskogo St 4, L'viv 79005, Ukraine.
Yuriy DatsyukDepartment of Physics of the Earth, Ivan Franko National University of L'viv, Grushevskogo St 4, L'viv 79005, Ukraine.
Tatsunosuke NakamuraDepartment of Microbiology, Niigata University of Pharmacy and Applied Life Sciences, Higashijima 265-1, 956-8603 Niigata, Japan.
Suzanne WalkerDepartment of Microbiology and Molecular Genetics, Harvard Medical School, 200 Longwood Ave, Boston, MA 02115, USA.
Victor FedorenkoDepartment of Genetics and Biotechnology, Ivan Franko National University of L'viv, Grushevskogo St 4, L'viv 79005, Ukraine.
Lviv University · UAHarvard University · USNiigata University of Pharmacy and Applied Life Sciences · JP

Funding

Technical Mother Machine CoreP01AI083214 · NIAID · SCHEPENS EYE RESEARCH INSTITUTE · PI Michael S Gilmore · 2009 to 2026
$39.4M
Mechanism and Inhibition of Enzymes that Assemble Bacterial Cell WallR01GM076710 · NIGMS · HARVARD MEDICAL SCHOOL · PI WALKER, SUZANNE · 2007 to 2019
$5.9M
NIGMS NIH HHS 5R01GM076710NIGMS NIH HHS R01 GM076710
6 · The paper itself

Abstract

Here, we report the identification and functional characterization of the Streptomyces globisporus 1912 gene lndYR, which encodes a GntR-like regulator of the YtrA subfamily. Disruption of lndYR arrested sporulation and antibiotic production in S. globisporus. The results of in vivo and in vitro studies revealed that the ABC transporter genes lndW-lndW2 are targets of LndYR repressive action. In Streptomyces coelicolor M145, lndYR overexpression caused a significant increase in the amount of extracellular actinorhodin. We suggest that lndYR controls the transcription of transport system genes in response to an as-yet-unidentified signal. Features that distinguish lndYR-based regulation from other known regulators are discussed.

Indexed as

Gene Expression Regulation, BacterialAnti-Bacterial AgentsATP-Binding Cassette TransportersDNA, BacterialGene DeletionMolecular Sequence DataRepressor ProteinsSequence Analysis, DNASpores, BacterialStreptomycesAnti-Bacterial AgentsATP-Binding Cassette TransportersDNA, BacterialRepressor Proteins

Identifiers

PMID21292750
PMCPMC3139444
OpenAlexW2110499921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.