ArticlePlant physiology2011
Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication.
Article in Plant physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 60 citations in OpenAlex.
- Comparison of the morphological and physiological characteristics of diploid and tetraploid Luculia pinceana Hook.BMC plant biology · 2025Article
- Polyploid plants take cytonuclear perturbations in stride.The Plant cell · 2024Article
- Integrated Analysis of Hi-C and RNA-Seq Reveals the Molecular Mechanism of Autopolyploid Growth Advantages in Pak Choi (Frontiers in plant science · 2022Article
- Whole-Genome Duplication Facilitated the Evolution of C4 Photosynthesis in Gynandropsis gynandra.Molecular biology and evolution · 2021Article
- Phenotypic diploidization in plant functional traits uncovered by synthetic neopolyploids in Dianthus broteri.Journal of experimental botany · 2021Article
- New Insights Into the Evolution of CFrontiers in plant science · 2021Article
- Article
- Effects of polyploidy on the coordination of gene expression between organellar and nuclear genomes inEcology and evolution · 2019Article
- Global impacts of chromosomal imbalance on gene expression inProceedings of the National Academy of Sciences of the United States of America · 2018Article
- Differential expression of photosynthesis-related genes in pentaploid interspecific hybrid and its decaploid of Fragaria spp.Genes & genomics · 2018Article
- Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived.Genome biology and evolution · 2018Article
- Whole genome duplication enhances the photosynthetic capacity of Chrysanthemum nankingense.Molecular genetics and genomics : MGG · 2017Article
- Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity.The Plant cell · 2017Article
- Polyploidy and the relationship between leaf structure and function: implications for correlated evolution of anatomy, morphology, and physiology in Brassica.BMC plant biology · 2017Article
- Genome-wide identification, classification, and analysis of NADP-ME family members from 12 crucifer species.Molecular genetics and genomics : MGG · 2016Article
- Strain of Synechocystis PCC 6803 with Aberrant Assembly of Photosystem II Contains Tandem Duplication of a Large Chromosomal Region.Frontiers in plant science · 2016Article
- Transcriptome Sequencing of Lima Bean (Phaseolus lunatus) to Identify Putative Positive Selection in Phaseolus and Legumes.International journal of molecular sciences · 2015Article
- Variation in transcriptome size: are we getting the message?Chromosoma · 2015Review
- Polyploidy in the Arabidopsis genus.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014Review
- Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa).The Plant cell · 2014Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The likelihood of duplicate gene retention following polyploidy varies by functional properties (e.g. gene ontologies or protein family domains), but little is known about the effects of whole-genome duplication on gene networks related by a common physiological process. Here, we examined the effects of both polyploid and nonpolyploid duplications on genes encoding the major functional groups of photosynthesis (photosystem I, photosystem II, the light-harvesting complex, and the Calvin cycle) in the cultivated soybean (Glycine max), which has experienced two rounds of whole-genome duplication. Photosystem gene families exhibit retention patterns consistent with dosage sensitivity (preferential retention of polyploid duplicates and elimination of nonpolyploid duplicates), whereas Calvin cycle and light-harvesting complex gene families do not. We observed similar patterns in barrel medic (Medicago truncatula), which shared the older genome duplication with soybean but has evolved independently for approximately 50 million years, and in Arabidopsis (Arabidopsis thaliana), which experienced two nested polyploidy events independent from the legume duplications. In both soybean and Arabidopsis, Calvin cycle gene duplicates exhibit a greater capacity for functional differentiation than do duplicates within the photosystems, which likely explains the greater retention of ancient, nonpolyploid duplicates and larger average gene family size for the Calvin cycle relative to the photosystems.
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