Evidence map›Paper›PMID 21288910›Full record

ArticleThe Journal of biological chemistry2011

Functional characterization of the multidomain F plasmid TraI relaxase-helicase.

Yuan Cheng, Dan E McNamara, Michael J Miley, Rebekah P Nash, Matthew R Redinbo

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Identification and Characterization ofFrontiers in microbiology · 2019
    Article
  4. Article
  5. Structures of TraI in solution.Journal of molecular modeling · 2014
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yuan ChengDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA.
Dan E McNamara
Michael J Miley
Rebekah P Nash
Matthew R Redinbo

Funding

XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BABBITT, PATRICIA CLEMENT · 1985 to 2011
$17.6M
Structure and Inhibition of the Conjugative DNA Relaxase-HelicaseR01AI078924 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI REDINBO, MATTHEW R · 2008 to 2012
$1.9M
Antiobic Resistance and Virulence Gene Transfer in Environmental PathogensF30ES016488 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NASH, REBEKAH POTTS · 2008 to 2012
$144k
NCRR NIH HHS P41 RR001081NIAID NIH HHS AI78924NIAID NIH HHS R01 AI078924NIEHS NIH HHS F30 ES016488
6 · The paper itself

Abstract

TraI, a bifunctional enzyme containing relaxase and helicase activities, initiates and drives the conjugative transfer of the Escherichia coli F plasmid. Here, we examined the structure and function of the TraI helicase. We show that TraI binds to single-stranded DNA (ssDNA) with a site size of ∼25 nucleotides, which is significantly longer than the site size of other known superfamily I helicases. Low cooperativity was observed with the binding of TraI to ssDNA, and a double-stranded DNA-binding site was identified within the N-terminal region of TraI 1-858, outside the core helicase motifs of TraI. We have revealed that the affinity of TraI for DNA is negatively correlated with the ionic strength of the solution. The binding of AMPPNP or ADP results in a 3-fold increase in the affinity of TraI for ssDNA. Moreover, TraI prefers to bind ssDNA oligomers containing a single type of base. Finally, we elucidated the solution structure of TraI using small angle x-ray scattering. TraI exhibits an ellipsoidal shape in solution with four domains aligning along one axis. Taken together, these data result in the assembly of a model for the multidomain helicase activity of TraI.

Indexed as

F FactorAdenosine DiphosphateAdenylyl ImidodiphosphateBinding SitesContraindicationsDNADNA HelicasesDNA, Single-StrandedEscherichia coli ProteinsFluorescence PolarizationProtein BindingScattering, Small AngleX-Ray DiffractionAdenosine DiphosphateAdenylyl ImidodiphosphateDNADNA HelicasesDNA, Single-StrandedEscherichia coli ProteinsTraI protein, E coli

Identifiers

PMID21288910
PMCPMC3069467

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.