Evidence map›Paper›PMID 21288903›Full record

ArticleThe Journal of biological chemistry2011

Substrate and metal ion promiscuity in mannosylglycerate synthase.

Morten M Nielsen, Michael D L Suits, Min Yang, Conor S Barry, Carlos Martinez-Fleites, Louise E Tailford, James E Flint, Claire Dumon, Benjamin G Davis, Harry J Gilbert and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Crystal structures of the c-di-AMP-synthesizing enzyme CdaA.The Journal of biological chemistry · 2019
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  7. Crystal Structures of theFrontiers in plant science · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Morten M NielsenInstitute for Cell and Molecular Biosciences, Newcastle University, Medical School, Newcastle upon Tyne NE2 4HH, United Kingdom.
Michael D L Suits
Min Yang
Conor S Barry
Carlos Martinez-Fleites
Louise E Tailford
James E Flint
Claire Dumon
Benjamin G Davis
Harry J Gilbert
Gideon J Davies
Newcastle University · GBUniversity of Oxford · GBUniversity of York · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E000568/1Biotechnology and Biological Sciences Research Council BB/E001696/1Biotechnology and Biological Sciences Research Council BB/E004350/1Biotechnology and Biological Sciences Research Council BBS/E/F/00044452Biotechnology and Biological Sciences Research Council EGA17763
6 · The paper itself

Abstract

The enzymatic transfer of the sugar mannose from activated sugar donors is central to the synthesis of a wide range of biologically significant polysaccharides and glycoconjugates. In addition to their importance in cellular biology, mannosyltransferases also provide model systems with which to study catalytic mechanisms of glycosyl transfer. Mannosylglycerate synthase (MGS) catalyzes the synthesis of α-mannosyl-D-glycerate using GDP-mannose as the preferred donor species, a reaction that occurs with a net retention of anomeric configuration. Past work has shown that the Rhodothermus marinus MGS, classified as a GT78 glycosyltransferase, displays a GT-A fold and performs catalysis in a metal ion-dependent manner. MGS shows very unusual metal ion dependences with Mg(2+) and Ca(2+) and, to a lesser extent, Mn(2+), Ni(2+), and Co(2+), thus facilitating catalysis. Here, we probe these dependences through kinetic and calorimetric analyses of wild-type and site-directed variants of the enzyme. Mutation of residues that interact with the guanine base of GDP are correlated with a higher k(cat) value, whereas substitution of His-217, a key component of the metal coordination site, results in a change in metal specificity to Mn(2+). Structural analyses of MGS complexes not only provide insight into metal coordination but also how lactate can function as an alternative acceptor to glycerate. These studies highlight the role of flexible loops in the active center and the subsequent coordination of the divalent metal ion as key factors in MGS catalysis and metal ion dependence. Furthermore, Tyr-220, located on a flexible loop whose conformation is likely influenced by metal binding, also plays a critical role in substrate binding.

Indexed as

CatalysisBacterial ProteinsCalciumKineticsMagnesiumMannosyltransferasesMetalsMutagenesis, Site-DirectedRhodothermusSubstrate SpecificityBacterial ProteinsCalciumMagnesiummannosylglycerate synthaseMannosyltransferasesMetals

Identifiers

PMID21288903
PMCPMC3083222
OpenAlexW1974698584

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.