Evidence map›Paper›PMID 21287612›Full record

ArticleProteins2011

Simplified modeling approach suggests structural mechanisms for constitutive activation of the C5a receptor.

Gregory V Nikiforovich, Garland R Marshall, Thomas J Baranski

Open access · greenAbstract readValidation Study
In one paragraph

Article in Proteins, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. C4a: An Anaphylatoxin in Name Only.Journal of innate immunity · 2015
    Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Gregory V NikiforovichMolLife Design, LLC, St. Louis, Missouri 63141, USA. gnikiforovich@gmail.com
Garland R Marshall
Thomas J Baranski
Washington University in St. Louis · USUnion des Industries Ferroviaires Européennes · BE

Funding

Role of Receptor Dimerization in G Protein ActivationR01GM063720 · NIGMS · WASHINGTON UNIVERSITY · PI BARANSKI, THOMAS JOHN · 2002 to 2006
$1.3M
G Protein Activation Mechanisms by Hormone ReceptorsR01GM071634 · NIGMS · WASHINGTON UNIVERSITY · PI BARANSKI, THOMAS JOHN · 2007 to 2010
$1.2M
NIGMS NIH HHS GM63720NIGMS NIH HHS GM 71634NIGMS NIH HHS R01 GM063720NIGMS NIH HHS R01 GM071634
6 · The paper itself

Abstract

Molecular modeling of conformational changes occurring in the transmembrane region of the complement factor 5a receptor (C5aR) during receptor activation was performed by comparing two constitutively active mutants (CAMs) of C5aR, NQ (I124N/L127Q), and F251A, to those of the wild-type C5aR and NQ-N296A (I124N/L127Q/N296A), which have the wild-type phenotype. Modeling involved comprehensive sampling of various rotations of TM helices aligned to the crystal template of the dark-adapted rhodopsin along their long axes. By assuming that the relative energies of the spontaneously activated states of CAMs should be lower or at least comparable to energies characteristic for the ground states, we selected the plausible models for the conformational states associated with constitutive activation in C5aR. The modeling revealed that the hydrogen bonds between the side chains of D82-N119, S85-N119, and S131-C221 characteristic for the ground state were replaced by the hydrogen bonds D82-N296, N296-Y300, and S131-R134, respectively, in the activated states. Also, conformational transitions that occurred upon activation were hindered by contacts between the side chains of L127 and F251. The results rationalize the available data of mutagenesis in C5aR and offer the first specific molecular mechanism for the loss of constitutive activity in NQ-N296A. Our results also contributed to understanding the general structural mechanisms of activation in G-protein-coupled receptors lacking the "ionic lock", R(3.50) and E/D(6.30). Importantly, these results were obtained by modeling approaches that deliberately simplify many elements in order to explore potential conformations of GPCRs involving large-scale molecular movements.

Indexed as

Models, MolecularMutationProtein ConformationReceptor, Anaphylatoxin C5aReceptor, Anaphylatoxin C5a

Identifiers

PMID21287612
PMCPMC3072438
OpenAlexW2164090189

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.