Evidence map›Paper›PMID 21287611›Full record

ArticleProteins2011

Recognition of β-calcineurin by the domains of calmodulin: thermodynamic and structural evidence for distinct roles.

Susan E O'Donnell, Liping Yu, C Andrew Fowler, Madeline A Shea

Abstract read
In one paragraph

Article in Proteins, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. NaStructure (London, England : 1993) · 2021
    Article
  2. Assessing the Role of Calmodulin's Linker Flexibility in Target Binding.International journal of molecular sciences · 2021
    Article
  3. Calcineurin.Cell communication and signaling : CCS · 2020
    Review
  4. Article
  5. Article
  6. Backbone and side-chain resonance assignments of (CaBiomolecular NMR assignments · 2017
    Article
  7. Article
  8. Article
  9. Opposing Intermolecular Tuning of CaBiophysical journal · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Modeling intracellular signaling underlying striatal function in health and disease.Progress in molecular biology and translational science · 2014
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Transient disorder: Calcineurin as an example.Intrinsically disordered proteins
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Susan E O'DonnellDepartment of Biochemistry, University of Iowa, Roy J. and Lucille A. Carver College of Medicine, Iowa City, Iowa 52242-1109, USA.
Liping Yu
C Andrew Fowler
Madeline A Shea
University of Iowa · US

Funding

MOLECULAR DISSECTION OF CALMODULIN DOMAIN INTERACTIONSR01GM057001 · NIGMS · UNIVERSITY OF IOWA · PI SHEA, MADELINE A · 1998 to 2015
$2.9M
NIGMS NIH HHS R01 GM057001NIGMS NIH HHS R01 GM 57001
6 · The paper itself

Abstract

Calcineurin (CaN, PP2B, PPP3), a heterodimeric Ca(2+)-calmodulin-dependent Ser/Thr phosphatase, regulates swimming in Paramecia, stress responses in yeast, and T-cell activation and cardiac hypertrophy in humans. Calcium binding to CaN(B) (the regulatory subunit) triggers conformational change in CaN(A) (the catalytic subunit). Two isoforms of CaN(A) (α, β) are both abundant in brain and heart and activated by calcium-saturated calmodulin (CaM). The individual contribution of each domain of CaM to regulation of calcineurin is not known. Hydrodynamic analyses of (Ca(2+))₄-CaM(1-148) bound to βCaNp, a peptide representing its CaM-binding domain, indicated a 1:1 stoichiometry. βCaNp binding to CaM increased the affinity of calcium for the N- and C-domains equally, thus preserving intrinsic domain differences, and the preference of calcium for sites III and IV. The equilibrium constants for individual calcium-saturated CaM domains dissociating from βCaNp were ∼1 μM. A limiting K(d) ≤ 1 nM was measured directly for full-length CaM, while thermodynamic linkage analysis indicated that it was approximately 1 pM. βCaNp binding to ¹⁵N-(Ca(2+))₄-CaM(1-148) monitored by ¹⁵N/¹HN HSQC NMR showed that association perturbed the N-domain of CaM more than its C-domain. NMR resonance assignments of CaM and βCaNp, and interpretation of intermolecular NOEs observed in the ¹³C-edited and ¹²C-¹⁴N-filtered 3D NOESY spectrum indicated anti-parallel binding. The sole aromatic residue (Phe) located near the βCaNp C-terminus was in close contact with several residues of the N-domain of CaM outside the hydrophobic cleft. These structural and thermodynamic properties would permit the domains of CaM to have distinct physiological roles in regulating activation of βCaN.

Indexed as

ThermodynamicsAmino Acid SequenceCalcineurinCalmodulinLigandsModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein ConformationSequence Homology, Amino AcidCalcineurinCalmodulinLigands

Identifiers

PMID21287611
PMCPMC3057930
OpenAlexW2135837776

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.