Evidence map›Paper›PMID 21286786›Full record

ArticleBiometals : an international journal on the role of metal ions in biology, biochemistry, and medicine2011

Genetic and biochemical analyses of chromosome and plasmid gene homologues encoding ICL and ArCP domains in Vibrio anguillarum strain 775.

Manuela Di Lorenzo, Michiel Stork, Jorge H Crosa

Open access · hybridAbstract read
In one paragraph

Article in Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Iron Acquisition Strategies ofFrontiers in cellular and infection microbiology · 2017
    Review
  3. Plasmid- and chromosome-encoded siderophore anguibactin systems found in marine vibrios: biosynthesis, transport and evolution.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2013
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Manuela Di LorenzoDepartment of Microbial Ecology, Netherlands Institute of Ecology, Wageninegen, The Netherlands. M.diLorenzo@nioo.knaw.nl
Michiel Stork
Jorge H Crosa
Netherlands Institute of Ecology · NLOregon Health & Science University · USUtrecht University · NL

Funding

IRON UPTAKE AS A VIRULENCE FACTOR IN PATHOGENIC VIBRIOSR01AI019018 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI CROSA, JORGE H · 1985 to 2011
$3.9M
Assembly Line Biosynthesis of Bacterial SiderophoresR01GM064600 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI HEFFRON, FRED L · 2002 to 2012
$2.6M
NIAID NIH HHS AI19018NIAID NIH HHS R01 AI019018NIGMS NIH HHS GM64600NIGMS NIH HHS R01 GM064600
6 · The paper itself

Abstract

Anguibactin, the siderophore produced by Vibrio anguillarum 775 is synthesized from 2,3-dihydroxybenzoic acid (DHBA), cysteine and hydroxyhistamine via a nonribosomal peptide synthetase (NRPS) mechanism. Most of the genes encoding anguibactin biosynthetic proteins are harbored by the pJM1 plasmid. In this work we report the identification of a homologue of the plasmid-encoded angB on the chromosome of strain 775. The product of both genes harbor an isochorismate lyase (ICL) domain that converts isochorismic acid to 2,3-dihydro-2,3-dihydroxybenzoic acid, one of the steps of DHBA synthesis. We show in this work that both ICL domains are functional in the production of DHBA in V. anguillarum as well as in E. coli. Substitution by alanine of the aspartic acid residue in the active site of both ICL domains completely abolishes their isochorismate lyase activity in vivo. The two proteins also carry an aryl carrier protein (ArCP) domain. In contrast with the ICL domains only the plasmid encoded ArCP can participate in anguibactin production as determined by complementation analyses and site-directed mutagenesis in the active site of the plasmid encoded protein, S248A. The site-directed mutants, D37A in the ICL domain and S248A in the ArCP domain of the plasmid encoded AngB were also tested in vitro and clearly show the importance of each residue for the domain function and that each domain operates independently.

Indexed as

Carrier ProteinsCatalytic DomainChromosomes, BacterialEscherichia coliHydroxybenzoatesMutagenesis, Site-DirectedOxo-Acid-LyasesPhenotypePlasmidsVibrio2,3-dihydroxybenzoic acidCarrier Proteinschorismate pyruvate lyaseHydroxybenzoatesOxo-Acid-Lyases

Identifiers

PMID21286786
PMCPMC3123441
OpenAlexW2149592549

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.