Evidence map›Paper›PMID 21283772›Full record

ArticlePloS one2011

The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats.

Andrew J Alverson, Shi Zhuo, Danny W Rice, Daniel B Sloan, Jeffrey D Palmer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
22.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 228 citations in OpenAlex.

  1. Article
  2. Assembly and Characterization of the Complete Mitochondrial Genome ofInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Mitochondrial Genome Analysis ofEcology and evolution · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Andrew J AlversonDepartment of Biology, Indiana University, Bloomington, Indiana, United States of America. andy.alverson@gmail.com
Shi Zhuo
Danny W Rice
Daniel B Sloan
Jeffrey D Palmer
Indiana University Bloomington · USUniversity of Virginia · US

Funding

Horizontal Gene Transfer in Multicellular EukaryotesR01GM070612 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI PALMER, JEFFREY D · 2005 to 2008
$1.6M
Evolutionary Genomics of Supersized Mitochondrial GenomesF32GM080079 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI ALVERSON, ANDREW J · 2007 to 2009
$148k
NIGMS NIH HHS 1F32GM080079-01A1NIGMS NIH HHS F32 GM080079NIGMS NIH HHS R01 GM070612NIGMS NIH HHS R01-GM-70612
6 · The paper itself

Abstract

The mitochondrial genomes of seed plants are exceptionally fluid in size, structure, and sequence content, with the accumulation and activity of repetitive sequences underlying much of this variation. We report the first fully sequenced mitochondrial genome of a legume, Vigna radiata (mung bean), and show that despite its unexceptional size (401,262 nt), the genome is unusually depauperate in repetitive DNA and "promiscuous" sequences from the chloroplast and nuclear genomes. Although Vigna lacks the large, recombinationally active repeats typical of most other seed plants, a PCR survey of its modest repertoire of short (38-297 nt) repeats nevertheless revealed evidence for recombination across all of them. A set of novel control assays showed, however, that these results could instead reflect, in part or entirely, artifacts of PCR-mediated recombination. Consequently, we recommend that other methods, especially high-depth genome sequencing, be used instead of PCR to infer patterns of plant mitochondrial recombination. The average-sized but repeat- and feature-poor mitochondrial genome of Vigna makes it ever more difficult to generalize about the factors shaping the size and sequence content of plant mitochondrial genomes.

Indexed as

Recombination, GeneticRepetitive Sequences, Nucleic AcidBase SequenceFabaceaeGenome, MitochondrialGenome, PlantPolymerase Chain ReactionSequence Analysis, DNA

Identifiers

PMID21283772
PMCPMC3024419
OpenAlexW1971496713

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.