Evidence map›Paper›PMID 21283682›Full record

ArticlePloS one2011

Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host.

John P Jerome, Julia A Bell, Anne E Plovanich-Jones, Jeffrey E Barrick, C Titus Brown, Linda S Mansfield

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 98 citations in OpenAlex.

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  6. Diversity analysis of livestock-associatedOpen veterinary journal · 2024
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  7. Mutation bias and adaptation in bacteria.Microbiology (Reading, England) · 2023
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  16. Review
  17. Molecular diagnostics ofAIMS microbiology · 2021
    Article
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  20. Guide-free Cas9 from pathogenicScience advances · 2020
    Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

John P JeromeComparative Enteric Diseases Laboratory, Michigan State University, East Lansing, Michigan, United States of America.
Julia A Bell
Anne E Plovanich-Jones
Jeffrey E Barrick
C Titus Brown
Linda S Mansfield
Michigan United · USMichigan State University · USThe University of Texas at Austin · US

Funding

The Impact of Microbiome Composition, Diversity, and Function on Enteric DiseaseU19AI090872 · NIAID · MICHIGAN STATE UNIVERSITY · PI MANSFIELD, LINDA S. · 2010 to 2014
$7.1M
Identifying Mutations that Promote Microbial EvolvabilityR00GM087550 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BARRICK, JEFFREY EVAN · 2011 to 2013
$724k
Identifying Mutations that Promote Microbial EvolvabilityK99GM087550 · NIGMS · MICHIGAN STATE UNIVERSITY · PI BARRICK, JEFFREY EVAN · 2009 to 2010
$180k
NIAID NIH HHS N01 AI030058NIAID NIH HHS N01-AI-30058NIAID NIH HHS U19 AI090872NIGMS NIH HHS K99 GM087550NIGMS NIH HHS K99GM087550NIGMS NIH HHS R00 GM087550
6 · The paper itself

Abstract

The genome of the food-borne pathogen Campylobacter jejuni contains multiple highly mutable sites, or contingency loci. It has been suggested that standing variation at these loci is a mechanism for rapid adaptation to a novel environment, but this phenomenon has not been shown experimentally. In previous work we showed that the virulence of C. jejuni NCTC11168 increased after serial passage through a C57BL/6 IL-10(-/-) mouse model of campylobacteriosis. Here we sought to determine the genetic basis of this adaptation during passage. Re-sequencing of the 1.64 Mb genome to 200-500 X coverage allowed us to define variation in 23 contingency loci to an unprecedented depth both before and after in vivo adaptation. Mutations in the mouse-adapted C. jejuni were largely restricted to the homopolymeric tracts of thirteen contingency loci. These changes cause significant alterations in open reading frames of genes in surface structure biosynthesis loci and in genes with only putative functions. Several loci with open reading frame changes also had altered transcript abundance. The increase in specific phases of contingency loci during in vivo passage of C. jejuni, coupled with the observed virulence increase and the lack of other types of genetic changes, is the first experimental evidence that these variable regions play a significant role in C. jejuni adaptation and virulence in a novel host.

Indexed as

Genetic VariationAdaptation, PhysiologicalAnimalsCampylobacter InfectionsCampylobacter jejuniGenome, BacterialMiceMice, Inbred C57BLMutationOpen Reading FramesSerial PassageVirulence

Identifiers

PMID21283682
PMCPMC3025981
OpenAlexW2132160384

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.