Evidence map›Paper›PMID 21283670›Full record

ArticlePloS one2011

Single-nucleotide polymorphisms in LPA explain most of the ancestry-specific variation in Lp(a) levels in African Americans.

Rahul C Deo, James G Wilson, Chao Xing, Kim Lawson, W H Linda Kao, David Reich, Arti Tandon, Ermeg Akylbekova, Nick Patterson, Thomas H Mosley and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it, 74 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Trial
  6. Review
  7. Article
  8. Admixture mapping identifies complex trait associations with local ancestry in themedRxiv : the preprint server for health sciences · 2025
    Article
  9. Review
  10. Article
  11. Review
  12. Observational
  13. Lipoprotein(a): Just an Innocent Bystander in Arterial Hypertension?International journal of molecular sciences · 2023
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Rahul C DeoDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America. rdeo@partners.org
James G Wilson
Chao Xing
Kim Lawson
W H Linda Kao
David Reich
Arti Tandon
Ermeg Akylbekova
Nick Patterson
Thomas H Mosley
Eric Boerwinkle
Herman A Taylor
Harvard University · USUniversity of Mississippi Medical Center · USThe University of Texas Health Science Center at Houston · USJackson State University · USJohns Hopkins University · USMass General Brigham · USThe University of Texas Southwestern Medical Center · US

Funding

NORTH AND CENTRAL TEXAS CTSA FOR PEDIATRIC RESEARCHUL1RR024982 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2007 to 2011
$27.9M
MULTIDISCIPLINARY RESEARCH TRAINING IN CARDIOLOGYT32HL007208 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Patrick Thomas Ellinor, David E Sosnovik · 1985 to 2026
$16.1M
JACKSON HEART STUDY--EXAM CENTERN01HC095171 · HC · UNIVERSITY OF MISSISSIPPI MEDICAL CENTER · PI JONES, DANIEL W · 1999 to 2001
$4.6M
Genetic Susceptibility to Adverse Metabolic Consequences of ObesityRL1HL092550 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI COHEN, JONATHAN CHARLES · 2007 to 2011
$3.7M
Health Disparities and CVD: Admixture Mapping in the Jackson Heart StudyR01HL084107 · NHLBI · UNIVERSITY OF MISSISSIPPI MED CTR · PI WILSON, JAMES GRAHAM · 2006 to 2010
$2.9M
Genetic Determinants of Coronary AtherosclerosisR01HL082896 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI COHEN, JONATHAN CHARLES · 2007 to 2011
$2.0M
COMMUNITY AND COHORT SURVEILLANCE PROGRAMS-N01HC55015N01HC055015 · HC · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI CHAMBLESS, LLOYD E · 1985 to 2006
$1.1M
COMMUNITY AND COHORT SURVEILLANCE PROGRAMN01HC055016 · HC · BAYLOR COLLEGE OF MEDICINE · PI BALLANTYNE, CHRISTIE M · 1985 to 2000
$785k
FIELD CENTER FOR CCSPN01HC055019 · HC · UNIVERSITY OF MINNESOTA TWIN CITIES · PI FOLSOM, AARON R · 1985 to 2000
$748k
Bioinformatic Approaches to Small Molecule Profiling of Cardiometabolic DiseaseK08HL098361 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEO, RAHUL CHANDRAKANT · 2010 to 2014
$685k
Genetic Epidemiology of NAFLD and T2DMK01DK067207 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI KAO, WEN HONG LINDA · 2005 to 2009
$642k
FIELD CENTERN01HC055021 · HC · UNIVERSITY OF MISSISSIPPI MEDICAL CENTER · PI JONES, DANIEL W · 1985 to 2000
$617k
NCRR NIH HHS UL1 RR024982NCRR NIH HHS UL1RR024982NHLBI NIH HHS HL082896NHLBI NIH HHS HL092550NHLBI NIH HHS K08 HL098361NHLBI NIH HHS N01 HC055015NHLBI NIH HHS N01 HC055016NHLBI NIH HHS N01 HC055018NHLBI NIH HHS N01 HC055019NHLBI NIH HHS N01 HC055020NHLBI NIH HHS N01 HC055021NHLBI NIH HHS N01 HC055022NHLBI NIH HHS N01 HC095170NHLBI NIH HHS N01 HC095171NHLBI NIH HHS N01 HC095172NHLBI NIH HHS N01-HC-55015NHLBI NIH HHS N01-HC-55016NHLBI NIH HHS N01-HC-55018NHLBI NIH HHS N01-HC-55019NHLBI NIH HHS N01-HC-55021NHLBI NIH HHS N01-HC-55022NHLBI NIH HHS N01-HC-95170NHLBI NIH HHS N01-HC-95171NHLBI NIH HHS N01-HC-95172NHLBI NIH HHS R01 HL082896NHLBI NIH HHS R01 HL084107NHLBI NIH HHS RL1 HL092550NHLBI NIH HHS T32 HL007208NIDDK NIH HHS K01 DK067207NIDDK NIH HHS K01DK067207NIDDK NIH HHS R21 DK073482
6 · The paper itself

Abstract

Lipoprotein(a) (Lp(a)) is an important causal cardiovascular risk factor, with serum Lp(a) levels predicting atherosclerotic heart disease and genetic determinants of Lp(a) levels showing association with myocardial infarction. Lp(a) levels vary widely between populations, with African-derived populations having nearly 2-fold higher Lp(a) levels than European Americans. We investigated the genetic basis of this difference in 4464 African Americans from the Jackson Heart Study (JHS) using a panel of up to 1447 ancestry informative markers, allowing us to accurately estimate the African ancestry proportion of each individual at each position in the genome. In an unbiased genome-wide admixture scan for frequency-differentiated genetic determinants of Lp(a) level, we found a convincing peak (LOD = 13.6) at 6q25.3, which spans the LPA locus. Dense fine-mapping of the LPA locus identified a number of strongly associated, common biallelic SNPs, a subset of which can account for up to 7% of the variation in Lp(a) level, as well as >70% of the African-European population differences in Lp(a) level. We replicated the association of the most strongly associated SNP, rs9457951 (p = 6 × 10(-22), 27% change in Lp(a) per allele, ∼5% of Lp(a) variance explained in JHS), in 1,726 African Americans from the Dallas Heart Study and found an even stronger association after adjustment for the kringle(IV) repeat copy number. Despite the strong association with Lp(a) levels, we find no association of any LPA SNP with incident coronary heart disease in 3,225 African Americans from the Atherosclerosis Risk in Communities Study.

Indexed as

Black or African AmericanBlack PeopleCardiovascular DiseasesGenetic LociGenetic MarkersHumansKringlesLipoprotein(a)Polymorphism, Single NucleotideWhite PeopleGenetic MarkersLipoprotein(a)

Identifiers

PMID21283670
PMCPMC3025914
OpenAlexW2058507082

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.