Evidence map›Paper›PMID 21283143›Full record

ArticleMolecular systems biology2011

Substrate-dependent control of MAPK phosphorylation in vivo.

Yoosik Kim, Ze'ev Paroush, Knud Nairz, Ernst Hafen, Gerardo Jiménez, Stanislav Y Shvartsman

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 84 citations in OpenAlex.

  1. Dynamics and Sensitivity of Signaling Pathways.Current pathobiology reports · 2022
    Article
  2. Article
  3. A Practical Step-by-Step Guide for Quantifying Retroactivity in Gene Networks.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Outstanding questions in developmental ERK signaling.Development (Cambridge, England) · 2018
    Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Minibrain and Wings apart control organ growth and tissue patterning through down-regulation of Capicua.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Article
  15. Long-term dynamics of multisite phosphorylation.Molecular biology of the cell · 2016
    Article
  16. Control theory meets synthetic biology.Journal of the Royal Society, Interface · 2016
    Review
  17. Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Yoosik KimLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Ze'ev Paroush
Knud Nairz
Ernst Hafen
Gerardo Jiménez
Stanislav Y Shvartsman
ETH Zurich · CHPrinceton University · USHebrew University of Jerusalem · ILInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Genome wide analysis and modeling of signal integration in the Drosophila ovaryR01GM078079 · NIGMS · PRINCETON UNIVERSITY · PI SHVARTSMAN, STANISLAV Y. · 2006 to 2009
$978k
NIGMS NIH HHS P50 GM071508NIGMS NIH HHS R01 GM078079
6 · The paper itself

Abstract

Phosphorylation of the mitogen-activated protein kinase (MAPK) is essential for its enzymatic activity and ability to control multiple substrates inside a cell. According to the current models, control of MAPK phosphorylation is independent of its substrates, which are viewed as mere sensors of MAPK activity. Contrary to this modular view of MAPK signaling, our studies in the Drosophila embryo demonstrate that substrates can regulate the level of MAPK phosphorylation in vivo. We demonstrate that a twofold change in the gene dosage of a single substrate can induce a significant change in the phosphorylation level of MAPK and in the conversion of other substrates. Our results support a model where substrates of MAPK counteract its dephosphorylation by phosphatases. Substrate-dependent control of MAPK phosphorylation is a manifestation of a more general retroactive effect that should be intrinsic to all networks with covalent modification cycles.

Indexed as

Models, BiologicalAnimalsBasic Helix-Loop-Helix ProteinsDrosophilaDrosophila ProteinsDual Specificity Phosphatase 6Embryo, NonmammalianHMGB ProteinsMitogen-Activated Protein KinasesPhosphorylationRepressor ProteinsSignal TransductionSystems BiologyBasic Helix-Loop-Helix Proteinscic protein, DrosophilaDrosophila ProteinsDual Specificity Phosphatase 6gro protein, DrosophilaHMGB ProteinsMitogen-Activated Protein KinasesRepressor Proteins

Identifiers

PMID21283143
PMCPMC3063690
OpenAlexW2136969641

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.