Evidence map›Paper›PMID 21282659›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Expansions, contractions, and fragility of the spinocerebellar ataxia type 10 pentanucleotide repeat in yeast.

Nicole Cherng, Alexander A Shishkin, Lucas I Schlager, Ryan H Tuck, Laura Sloan, Robert Matera, Partha S Sarkar, Tetsuo Ashizawa, Catherine H Freudenreich, Sergei M Mirkin

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  8. Review
  9. Alternative DNA StructuresMicrobiology and molecular biology reviews : MMBR · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Genetic Assays to Study Repeat Fragility in Saccharomyces cerevisiae.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Nicole CherngDepartment of Biology, Tufts University, Medford, MA 02155, USA.
Alexander A Shishkin
Lucas I Schlager
Ryan H Tuck
Laura Sloan
Robert Matera
Partha S Sarkar
Tetsuo Ashizawa
Catherine H Freudenreich
Sergei M Mirkin
Tufts University · USThe University of Texas Medical Branch at Galveston · USUniversity of Florida · US

Funding

REPLICATION OF SIMPLE DNA REPEATSR01GM060987 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MIRKIN, SERGEI · 2001 to 2017
$4.9M
Spinocerebellar Ataxia Type 10R01NS041547 · NINDS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ASHIZAWA, TETSUO · 2001 to 2009
$2.5M
Stability &Fragility of Trinucleotide Repeats in YeastR01GM063066 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI FREUDENREICH, CATHERINE H · 2001 to 2010
$2.4M
NIGMS NIH HHS GM063066NIGMS NIH HHS GM60987NIGMS NIH HHS R01 GM060987NIGMS NIH HHS R01 GM063066NINDS NIH HHS NS041547NINDS NIH HHS R01 NS041547
6 · The paper itself

Abstract

Spinocerebellar ataxia 10 (SCA10) is an autosomal dominant disease caused by large-scale expansions of the (ATTCT)(n) repeat within an intron of the human ATXN10 gene. In contrast to other expandable repeats, this pentanucleotide repeat does not form stable intra- or interstranded DNA structures, being a DNA unwinding element instead. We analyzed the instability of the (ATTCT)(n) repeat in a yeast experimental system, where its expansions led to inactivation of the URA3 reporter gene. The inactivation was due to a dramatic decrease in the mRNA levels owing to premature transcription termination and RNA polyadenylation at the repeat. The rates of expansions strongly increased with the repeat's length, mimicking genetic anticipation in human pedigrees. A first round of genetic analysis showed that a functional TOF1 gene precludes, whereas a functional RAD5 gene promotes, expansions of the (ATTCT)(n) repeat. We hypothesize that repeat expansions could occur upon fortuitous template switching during DNA replication. The rate of repeat contractions was elevated in the Tof1 knockout strain, but it was not affected by the RAD5 gene. Supporting the notion of replication irregularities, we found that (ATTCT)(n) repeats also cause length-dependent chromosomal fragility in yeast. Repeat-mediated fragility was also affected by the Tof1 and Rad5 proteins, being reduced in their absence.

Indexed as

Ataxin-10Base SequenceBrazilCloning, MolecularDNADNA-Binding ProteinsDNA HelicasesDNA Repeat ExpansionGene SilencingGenes, ReporterHumansMicrosatellite RepeatsMolecular Sequence DataNerve Tissue ProteinsReverse Transcriptase Polymerase Chain ReactionSaccharomyces cerevisiaeAtaxin-10ATXN10 protein, humanDNADNA-Binding ProteinsDNA HelicasesNerve Tissue ProteinsRAD5 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTOF1 protein, S cerevisiaeURA3 protein, S cerevisiae

Identifiers

PMID21282659
PMCPMC3041125
OpenAlexW2080611582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.