Evidence map›Paper›PMID 21282631›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile).

Christopher D Smith, Aleksey Zimin, Carson Holt, Ehab Abouheif, Richard Benton, Elizabeth Cash, Vincent Croset, Cameron R Currie, Eran Elhaik, Christine G Elsik and 40 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
20.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 290 citations in OpenAlex.

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91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

50 authors at 15 institutions in 3 countries.

Christopher D SmithDepartment of Biology and Computer Science, San Francisco State University, San Francisco, CA 94132, USA. smithcd@sfsu.edu
Aleksey Zimin
Carson Holt
Ehab Abouheif
Richard Benton
Elizabeth Cash
Vincent Croset
Cameron R Currie
Eran Elhaik
Christine G Elsik
Marie-Julie Fave
Vilaiwan Fernandes
Jürgen Gadau
Joshua D Gibson
Dan Graur
Kirk J Grubbs
Darren E Hagen
Martin Helmkampf
Jo-Anne Holley
Hao Hu
Ana Sofia Ibarraran Viniegra
Brian R Johnson
Reed M Johnson
Abderrahman Khila
Jay W Kim
Joseph Laird
Kaitlyn A Mathis
Joseph A Moeller
Monica C Muñoz-Torres
Marguerite C Murphy
Rin Nakamura
Surabhi Nigam
Rick P Overson
Jennifer E Placek
Rajendhran Rajakumar
Justin T Reese
Hugh M Robertson
Chris R Smith
Andrew V Suarez
Garret Suen
Elissa L Suhr
Shu Tao
Candice W Torres
Ellen van Wilgenburg
Lumi Viljakainen
Kimberly K O Walden
Alexander L Wild
Mark Yandell
James A Yorke
Neil D Tsutsui
University of Illinois Urbana-Champaign · USArizona State University · USMcGill University · CAGeorgetown University · USSan Francisco State University · USUniversity of California, Berkeley · USUniversity of Utah · USEarlham College · USUniversity of Lausanne · CHUniversity of Maryland, College Park · USUniversity of Wisconsin–Madison · USCornell University · USGreat Lakes Bioenergy Research Center · USJohns Hopkins Medicine · USUniversity of Houston · US

Funding

Software for the creation and quality control of genome annotationsR01HG004694 · NHGRI · UNIVERSITY OF UTAH · PI YANDELL, MARK DOUGLAS · 2008 to 2011
$2.2M
Argentine ants: A system a study genes involved in human behavioral diseaseSC2MH086071 · NIMH · SAN FRANCISCO STATE UNIVERSITY · PI SMITH, CHRISTOPHER DAVID · 2008 to 2010
$345k
NHGRI NIH HHS 1R01HG004694NHGRI NIH HHS R01 HG004694NIMH NIH HHS 5SC2MH086071NIMH NIH HHS SC2 MH086071
6 · The paper itself

Abstract

Ants are some of the most abundant and familiar animals on Earth, and they play vital roles in most terrestrial ecosystems. Although all ants are eusocial, and display a variety of complex and fascinating behaviors, few genomic resources exist for them. Here, we report the draft genome sequence of a particularly widespread and well-studied species, the invasive Argentine ant (Linepithema humile), which was accomplished using a combination of 454 (Roche) and Illumina sequencing and community-based funding rather than federal grant support. Manual annotation of >1,000 genes from a variety of different gene families and functional classes reveals unique features of the Argentine ant's biology, as well as similarities to Apis mellifera and Nasonia vitripennis. Distinctive features of the Argentine ant genome include remarkable expansions of gustatory (116 genes) and odorant receptors (367 genes), an abundance of cytochrome P450 genes (>110), lineage-specific expansions of yellow/major royal jelly proteins and desaturases, and complete CpG DNA methylation and RNAi toolkits. The Argentine ant genome contains fewer immune genes than Drosophila and Tribolium, which may reflect the prominent role played by behavioral and chemical suppression of pathogens. Analysis of the ratio of observed to expected CpG nucleotides for genes in the reproductive development and apoptosis pathways suggests higher levels of methylation than in the genome overall. The resources provided by this genome sequence will offer an abundance of tools for researchers seeking to illuminate the fascinating biology of this emerging model organism.

Indexed as

PhylogenyAnimalsAntsBase SequenceCaliforniaDNA MethylationGene LibraryGenetics, PopulationGenome, InsectGenomicsHierarchy, SocialMolecular Sequence DataPolymorphism, Single NucleotideReceptors, OdorantSequence Analysis, DNAReceptors, Odorant

Identifiers

PMID21282631
PMCPMC3078359
OpenAlexW2114772657

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.