Evidence map›Paper›PMID 21282112›Full record

ArticleThe Journal of biological chemistry2011

Regulation of the mutually exclusive exons 8a and 8 in the CaV1.2 calcium channel transcript by polypyrimidine tract-binding protein.

Zhen Zhi Tang, Shalini Sharma, Sika Zheng, Geetanjali Chawla, Julia Nikolic, Douglas L Black

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 77 citations in OpenAlex.

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  15. RBM20 Regulates CaV1.2 Surface Expression by Promoting Exon 9* Inclusion ofInternational journal of molecular sciences · 2019
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  20. The determinants of alternative RNA splicing in human cells.Molecular genetics and genomics : MGG · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Zhen Zhi TangHoward Hughes Medical Institute, UCLA, Los Angeles, California 90095, USA.
Shalini Sharma
Sika Zheng
Geetanjali Chawla
Julia Nikolic
Douglas L Black
Howard Hughes Medical Institute · USUniversity of California, Los Angeles · US

Funding

The Regulation of Neuronal Exon SplicingR01GM049662 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BLACK, DOUGLAS L · 1998 to 2019
$6.5M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM049662NIGMS NIH HHS R01 GM49662
6 · The paper itself

Abstract

CaV1.2 calcium channels play roles in diverse cellular processes such as gene regulation, muscle contraction, and membrane excitation and are diversified in their activity through extensive alternative splicing of the CaV1.2 mRNA. The mutually exclusive exons 8a and 8 encode alternate forms of transmembrane segment 6 (IS6) in channel domain 1. The human genetic disorder Timothy syndrome is caused by mutations in either of these two CaV1.2 exons, resulting in disrupted Ca(2+) homeostasis and severe pleiotropic disease phenotypes. The tissue-specific pattern of exon 8/8a splicing leads to differences in symptoms between patients with exon 8 or 8a mutations. Elucidating the mechanisms controlling the exon 8/8a splicing choice will be important in understanding the spectrum of defects associated with the disease. We found that the polypyrimidine tract-binding protein (PTB) mediates a switch from exon 8 to 8a splicing. PTB and its neuronal homolog, nPTB, are widely studied splicing regulators controlling large sets of alternative exons. During neuronal development, PTB expression is down-regulated with a concurrent increase in nPTB expression. Exon 8a is largely repressed in embryonic mouse brain but is progressively induced during neuronal differentiation as PTB is depleted. This splicing repression is mediated by the direct binding of PTB to sequence elements upstream of exon 8a. The nPTB protein is a weaker repressor of exon 8a, resulting in a shift in exon choice when nPTB replaces PTB in cells. These results provide mechanistic understanding of how these two exons, important for human disease, are controlled.

Indexed as

Alternative SplicingAnimalsAutistic DisorderBrainCalciumCalcium Channels, L-TypeCell DifferentiationCell LineEmbryo, MammalianExonsGene Expression Regulation, DevelopmentalHumansLong QT SyndromeMiceMutationNerve Tissue ProteinsCACNA1C protein, mouseCalciumCalcium Channels, L-TypeNerve Tissue ProteinsPolypyrimidine Tract-Binding ProteinPTBP2 protein, humanPtbp2 protein, mouse

Identifiers

PMID21282112
PMCPMC3060452
OpenAlexW1968091665

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.