Evidence map›Paper›PMID 21281593›Full record

ArticleBiophysical journal2011

Fluctuation methods to study protein aggregation in live cells: concanavalin A oligomers formation.

V Vetri, G Ossato, V Militello, M A Digman, M Leone, E Gratton

Abstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Sensors and actuators. B, Chemical · 2021
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

V VetriDipartimento di Scienze Fisiche ed Astronomiche, University of Palermo, Palermo, Italy.
G OssatoLaboratory for Fluorescence Dynamics, University of California, Irvine, California.
V MilitelloDipartimento di Scienze Fisiche ed Astronomiche, University of Palermo, Palermo, Italy.
M A DigmanLaboratory for Fluorescence Dynamics, University of California, Irvine, California.
M LeoneDipartimento di Scienze Fisiche ed Astronomiche, University of Palermo, Palermo, Italy.
E GrattonLaboratory for Fluorescence Dynamics, University of California, Irvine, California. Electronic address: egratton22@yahoo.com.

Funding

STRUCTUREU54GM064346 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI IMPERIALI, BARBARA · 2001 to 2010
$74.9M
Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
Uncover Strategies Used By Biological SystemsP50GM076516 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2007 to 2016
$25.1M
YEAST RIBOSOMAL STALK COMPOSITION IN VIVO BY TWO-PHOTON FCS AND PCH ANALYSISP41RR003155 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GRATTON, ENRICO · 1986 to 2011
$14.9M
NCI NIH HHS P30 CA062203NCRR NIH HHS P41-RR03155NIGMS NIH HHS P50 GM076516NIGMS NIH HHS P50-GM076516NIGMS NIH HHS U54 GM064346
6 · The paper itself

Abstract

Prefibrillar oligomers of proteins are suspected to be the primary pathogenic agents in several neurodegenerative diseases. A key approach for elucidating the pathogenic mechanisms is to probe the existence of oligomers directly in living cells. In this work, we were able to monitor the process of aggregation of Concanavalin A in live cells. We used number and brightness analysis, two-color cross number and brightness analysis, and Raster image correlation spectroscopy to obtain the number of molecules, aggregation state, and diffusion coefficient as a function of time and cell location. We observed that binding of Concanavalin A to the membrane and the formation of small aggregates paralleled cell morphology changes, indicating progressive cell compaction and death. Upon protein aggregation, we observed increased membrane water penetration as reported by Laurdan generalized polarization imaging.

Indexed as

Protein Structure, Quaternary2-NaphthylamineAnimalsAnnexin A5BiophysicsCell MembraneCell ShapeCell SurvivalConcanavalin ADiffusionEmbryo, MammalianFibroblastsFluorescein-5-isothiocyanateLauratesMiceSpectrum Analysis2-NaphthylamineAnnexin A5Concanavalin AFluorescein-5-isothiocyanateLaurateslaurdan

Identifiers

PMID21281593
PMCPMC3030242

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.