Evidence map›Paper›PMID 21280672›Full record

ArticleJournal of proteome research2011

Assessing the components of the eIF3 complex and their phosphorylation status.

Adam R Farley, David W Powell, Connie M Weaver, Jennifer L Jennings, Andrew J Link

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. DivergentLife science alliance · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Adam R FarleyDepartment of Biochemisty, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-2363, United States.
David W Powell
Connie M Weaver
Jennifer L Jennings
Andrew J Link
Vanderbilt University · US

Funding

TISSUE CoreP50CA098131 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO, PIETENPOL, JENNIFER A · 2003 to 2024
$48.7M
T Lymphocyte based functional genomics of inflammationP01HL068744 · NHLBI · VANDERBILT UNIVERSITY · PI VAN KAER, LUC · 2002 to 2006
$9.9M
VIRUSES, NUCLEIC ACIDS, GROWTH, AND CANCERT32CA009385 · NCI · VANDERBILT UNIVERSITY · PI RULEY, HENRY EARL · 1985 to 2007
$4.1M
Proteomic Analysis of Eukaryotic Protein SynthesisR01GM064779 · NIGMS · VANDERBILT UNIVERSITY · PI LINK, ANDREW J. · 2002 to 2010
$3.0M
Proteomic Construction of Stress Regulated NetworksR01ES011993 · NIEHS · VANDERBILT UNIVERSITY · PI WEIL, PETER ANTHONY · 2002 to 2005
$2.0M
Proteomic Analysis of Notch3 Complexes in Lung CancerF32GM073549 · NIGMS · VANDERBILT UNIVERSITY · PI POWELL, DAVID W · 2004 to 2005
$47k
NCI NIH HHS CA098131NCI NIH HHS P50 CA098131NCI NIH HHS T32 CA009385NHLBI NIH HHS HL68744NHLBI NIH HHS P01 HL068744NIAID NIH HHS N01 AI040079NIEHS NIH HHS ES11993NIEHS NIH HHS R01 ES011993NIGMS NIH HHS F32 GM073549NIGMS NIH HHS GM073549-02NIGMS NIH HHS GM64779NIGMS NIH HHS R01 GM064779
6 · The paper itself

Abstract

The eukaryotic initiation factor 3 (eIF3) is an essential, highly conserved multiprotein complex that is a key component in the recruitment and assembly of the translation initiation machinery. To better understand the molecular function of eIF3, we examined its composition and phosphorylation status in Saccharomyces cerevisiae. The yeast eIF3 complex contains five core components: Rpg1, Nip1, Prt1, Tif34, and Tif35. 2-D LC-MS/MS analysis of affinity purified eIF3 complexes showed that several other initiation factors (Fun12, Tif5, Sui3, Pab1, Hcr1, and Sui1) and the casein kinase 2 complex (CK2) copurify. In Vivo metabolic labeling of proteins with (32)P revealed that Nip1 is phosphorylated. Using 2-D LC-MS/MS analysis of eIF3 complexes, we identified Prt1 phosphopeptides indicating phosphorylation at S22 and T707 and a Tif5 phosphopeptide with phosphorylation at T191. Additionally, we used immobilized metal affinity chromatography (IMAC) to enrich for eIF3 phosphopeptides and tandem mass spectrometry to identify phosphorylated residues. We found that three CK2 consensus sequences in Nip1 are phosphorylated: S98, S99, and S103. Using in vitro kinase assays, we showed that CK2 phophorylates Nip1 and that a synthetic Nip1 peptide containing S98, S99, and S103 competitively inhibits the reaction. Replacement of these three Nip1 serines with alanines causes a slow growth phenotype.

Indexed as

Amino Acid SequenceAnimalsChromatography, LiquidEukaryotic Initiation Factor-3Molecular Sequence DataMultiprotein ComplexesPhosphopeptidesPhosphorylationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTandem Mass SpectrometryEukaryotic Initiation Factor-3Multiprotein ComplexesNIP1 protein, S cerevisiaePhosphopeptidesSaccharomyces cerevisiae Proteins

Identifiers

PMID21280672
PMCPMC3446855
OpenAlexW2171977912

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.