New approaches to modeling complex biochemistry.

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

Who cites it

13 citing papers in PubMed.

1. Model comparison via simplicial complexes and persistent homology.Royal Society open science · 2021
   Article
2. The Kappa platform for rule-based modeling.Bioinformatics (Oxford, England) · 2018
   Article
3. Learning (from) the errors of a systems biology model.Scientific reports · 2016
   Article
4. Modeling for (physical) biologists: an introduction to the rule-based approach.Physical biology · 2015
   Review
5. Biomarkers of Nutrition for Development-Folate Review.The Journal of nutrition · 2015
   Review
6. A rule-based kinetic model of RNA polymerase II C-terminal domain phosphorylation.Journal of the Royal Society, Interface · 2013
   Article
7. Programming biological models in Python using PySB.Molecular systems biology · 2013
   Article
8. Systems modelling of NHEJ reveals the importance of redox regulation of Ku70/80 in the dynamics of dna damage foci.PloS one · 2013
   Article
9. CPT: Pharmacometrics and Systems Pharmacology.CPT: pharmacometrics & systems pharmacology · 2012
   Article
10. Consolidation and translation regulation.Learning & memory (Cold Spring Harbor, N.Y.) · 2012
    Review
11. Understanding immunology via engineering design: the role of mathematical prototyping.Computational and mathematical methods in medicine · 2012
    Review
12. An evolutionary perspective on anti-tumor immunity.Frontiers in oncology · 2012
    Article
13. Modeling cellular compartmentation in one-carbon metabolism.Wiley interdisciplinary reviews. Systems biology and medicine
    Review

Corrections and comments

• Comment on
  Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.2011

Authors and funding

2 authors.

Funding

Abstract

PubMed holds no abstract for this paper.

Indexed as