ArticleBioinformatics (Oxford, England)2011
PiNGO: a Cytoscape plugin to find candidate genes in biological networks.
Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed, 46 citations in OpenAlex.
- Article
- CSPG4.CAR-T Cells Modulate Extracellular Matrix Remodeling in DMD Cardiomyopathy.International journal of molecular sciences · 2025Article
- Transcriptome and WGCNA reveals the potential genetic basis of photoperiod-sensitive male sterility in soybean.BMC genomics · 2025Article
- Transcriptome analysis of lipid biosynthesis during kernel development in two walnut (Juglans regia L.) varieties of 'Xilin 3' and 'Xiangling'.BMC plant biology · 2024Article
- Integrating Genome-Wide Association Study, Transcriptome and Metabolome Reveal Novel QTL and Candidate Genes That Control Protein Content in Soybean.Plants (Basel, Switzerland) · 2024Article
- BASIC PENTACYSTEINE1 regulatesFrontiers in plant science · 2024Article
- Combined analysis of the metabolome and transcriptome provides insight into seed oil accumulation in soybean.Biotechnology for biofuels and bioproducts · 2023Article
- Global Transcriptome Analysis Revealed the Molecular Regulation Mechanism of Pigment and Reactive Oxygen Species Metabolism During the Stigma Development ofFrontiers in plant science · 2022Article
- Tracing the footsteps of autophagy in computational biology.Briefings in bioinformatics · 2021Article
- Using single-plant-omics in the field to link maize genes to functions and phenotypes.Molecular systems biology · 2020Article
- Comparative transcriptome and co-expression analysis reveal key genes involved in leaf margin serration inChinese herbal medicines · 2020Article
- WGCNA Analysis of Salt-Responsive Core Transcriptome Identifies Novel Hub Genes in Rice.Genes · 2019Article
- Article
- Red and Blue Light Promote the Accumulation of Artemisinin in Artemisia Annua L.Molecules (Basel, Switzerland) · 2018Article
- RNA Sequencing and Coexpression Analysis Reveal Key Genes Involved in α-Linolenic Acid Biosynthesis in Perilla frutescens Seed.International journal of molecular sciences · 2017Article
- Sex chromosomes drive gene expression and regulatory dimorphisms in mouse embryonic stem cells.Biology of sex differences · 2017Article
- Annexin A2 links poor myofiber repair with inflammation and adipogenic replacement of the injured muscle.Human molecular genetics · 2017Article
- MinePath: Mining for Phenotype Differential Sub-paths in Molecular Pathways.PLoS computational biology · 2016Article
- MYC functions are specific in biological subtypes of breast cancer and confers resistance to endocrine therapy in luminal tumours.British journal of cancer · 2016Article
- Module-based functional pathway enrichment analysis of a protein-protein interaction network to study the effects of intestinal microbiota depletion in mice.Molecular medicine reports · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
Abstract
unlabelledPiNGO is a tool to screen biological networks for candidate genes, i.e. genes predicted to be involved in a biological process of interest. The user can narrow the search to genes with particular known functions or exclude genes belonging to particular functional classes. PiNGO provides support for a wide range of organisms and Gene Ontology classification schemes, and it can easily be customized for other organisms and functional classifications. PiNGO is implemented as a plugin for Cytoscape, a popular network visualization platform. AVAILABILITY: PiNGO is distributed as an open-source Java package under the GNU General Public License (http://www.gnu.org/), and can be downloaded via the Cytoscape plugin manager. A detailed user guide and tutorial are available on the PiNGO website (http://www.psb.ugent.be/esb/PiNGO.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.