Evidence map›Paper›PMID 21267555›Full record

ArticleJournal of molecular evolution2011

Identification and characterization of gene expression involved in the coloration of cichlid fish using microarray and qRT-PCR approaches.

Helen M Gunter, Céline Clabaut, Walter Salzburger, Axel Meyer

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of molecular evolution, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Carotenoid-based coloration in cichlid fishes.Comparative biochemistry and physiology. Part A, Molecular & integrative physiology · 2014
    Review
  5. Article
  6. Article
  7. Article
  8. Genomics of adaptation and speciation in cichlid fishes: recent advances and analyses in African and Neotropical lineages.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Helen M GunterLehrstuhl für Zoologie und Evolutionsbiologie, Department of Biology, University of Konstanz, Universitätsstr 10, 78457 Constance, Germany.
Céline Clabaut
Walter Salzburger
Axel Meyer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been suggested that speciation on the basis of sexual selection is an important mechanism for the generation of new species for East African cichlids, where male body coloration is one of the major discriminatory factors used by females in mate choice. To gain insight into the molecular basis of cichlid coloration, we studied the Lake Malawi cichlid Pseudotropheus saulosi, comparing transcription in the bright blue skin of males to the yellow skin of females. Our cDNA microarray experiments identified 46 clones that exhibited expression differences between the two sexes, of which five were confirmed to be differentially expressed by relative quantitative real-time PCR (qRT-PCR). This gene list includes a representative from the endosomal-to-Golgi vesicle trafficking pathway, Coatomer protein complex, subunit zeta-1 (Copz-1), which is known to be a critical determinant of pigmentation in humans and zebrafish. With the support of microscopic images of the skin of these specimens, we interpret the transcriptional differences between the blue males and yellow females. Here, we provide insight into the putative functional diversification of genes involved in the coloration of cichlids and by extension, on the evolution of coloration in teleost fish.

Indexed as

Gene Expression ProfilingAnimalsCichlidsCoatomer ProteinCollagen Type IFemaleMaleOligonucleotide Array Sequence AnalysisPigments, BiologicalReverse Transcriptase Polymerase Chain ReactionSkin PigmentationUbiquitin-Conjugating EnzymesCoatomer ProteinCollagen Type IPigments, BiologicalUbiquitin-Conjugating Enzymes

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.