Evidence map›Paper›PMID 21262195›Full record

ArticleBiochimica et biophysica acta2011

The amyloidogenic SEVI precursor, PAP248-286, is highly unfolded in solution despite an underlying helical tendency.

Jeffrey R Brender, Ravi Prakash Reddy Nanga, Nataliya Popovych, Ronald Soong, Peter M Macdonald, Ayyalusamy Ramamoorthy

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
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  7. Article
  8. Structure, function and antagonism of semen amyloids.Chemical communications (Cambridge, England) · 2018
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Fluorescence detection of cationic amyloid fibrils in human semen.Bioorganic & medicinal chemistry letters · 2013
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jeffrey R BrenderDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA.
Ravi Prakash Reddy Nanga
Nataliya Popovych
Ronald Soong
Peter M Macdonald
Ayyalusamy Ramamoorthy
University of Michigan · USUniversity of Toronto · CA

Funding

Membrane Interaction and Membrane Mediated Aggregation of AmylinR21DK078885 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2009 to 2010
$411k
NIDDK NIH HHS DK078885NIDDK NIH HHS R21 DK078885
6 · The paper itself

Abstract

Amyloid fibers in human semen known as SEVI (semen-derived enhancer of viral infection) dramatically increase the infectivity of HIV and other enveloped viruses, which appears to be linked to the promotion of bridging interactions and the neutralization of electrostatic repulsion between the host and the viral cell membranes. The SEVI precursor PAP(248-286) is mostly disordered when bound to detergent micelles, in contrast to the highly α-helical structures found for most amyloid proteins. To determine the origin of this difference, the structures of PAP(248-286) were solved in aqueous solution and with 30% and 50% trifluoroethanol. In solution, pulsed field gradient (PFG)-NMR and (1)H-(1)H NOESY experiments indicate that PAP(248-286) is unfolded to an unusual degree for an amyloidogenic peptide but adopts significantly helical structures in TFE solutions. The clear differences between the structures of PAP(248-286) in TFE and SDS indicate electrostatic interactions play a large role in the folding of the peptide, consistent with the slight degree of penetration of PAP(248-286) into the hydrophobic core of the micelle. This is another noticeable difference between PAP(248-286) and other amyloid peptides, which generally show penetration into at least the headgroup region of the bilayer, and may explain some of the unusual properties of SEVI.

Indexed as

Protein Structure, SecondaryProtein UnfoldingAmino Acid SequenceAmyloidHumansHydrophobic and Hydrophilic InteractionsMagnetic Resonance SpectroscopyMicellesModels, MolecularMolecular Sequence DataPeptide FragmentsProtein Tyrosine PhosphatasesSodium Dodecyl SulfateSolutionsStatic ElectricityTrifluoroethanolAmyloiddodecyltriethoxy sulfateMicellesPeptide Fragmentsprostatic acid phosphatase (248-286), humanProtein Tyrosine PhosphatasesSodium Dodecyl SulfateSolutionsTrifluoroethanolWater

Identifiers

PMID21262195
PMCPMC3062746
OpenAlexW1998460697

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.