Evidence map›Paper›PMID 21258331›Full record

ArticleNature nanotechnology2011

Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor.

Sebastian Sorgenfrei, Chien-yang Chiu, Ruben L Gonzalez, Young-Jun Yu, Philip Kim, Colin Nuckolls, Kenneth L Shepard

Abstract read
In one paragraph

Article in Nature nanotechnology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 382 citations in OpenAlex.

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  14. Unraveling the Kinetics of the 10-23 RNA-Cleaving DNAzyme.International journal of molecular sciences · 2023
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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sebastian SorgenfreiDepartment of Electrical Engineering, Columbia University, New York, New York 10027, USA.
Chien-yang Chiu
Ruben L Gonzalez
Young-Jun Yu
Philip Kim
Colin Nuckolls
Kenneth L Shepard
Columbia University · US

Funding

The Structural Dynamics of Translation InitiationR01GM084288 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GONZALEZ, RUBEN L · 2009 to 2022
$4.4M
Low-cost active CMOS biochips for whole genome analysisR33HG003089 · NHGRI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SHEPARD, KENNETH L · 2007 to 2009
$1.2M
NHGRI NIH HHS R33 HG003089NHGRI NIH HHS R33-HG003089NIGMS NIH HHS R01 GM084288
6 · The paper itself

Abstract

Single-molecule measurements of biomolecules can provide information about the molecular interactions and kinetics that are hidden in ensemble measurements. However, there is a requirement for techniques with improved sensitivity and time resolution for use in exploring biomolecular systems with fast dynamics. Here, we report the detection of DNA hybridization at the single-molecule level using a carbon nanotube field-effect transistor. By covalently attaching a single-stranded probe DNA sequence to a point defect in a carbon nanotube, we are able to measure two-level fluctuations in the conductance of the nanotube in the presence of a complementary DNA target. The kinetics of the system are studied as a function of temperature, allowing the measurement of rate constants, melting curves and activation energies for different sequences and target concentrations. The kinetics demonstrate non-Arrhenius behaviour, in agreement with DNA hybridization experiments using fluorescence correlation spectroscopy. This technique is label-free and could be used to probe single-molecule dynamics at microsecond timescales.

Indexed as

Transistors, ElectronicBiosensing TechniquesDNA, Single-StrandedElectrodesKineticsMicroscopy, Atomic ForceMicroscopy, FluorescenceMolecular Dynamics SimulationNanotechnologyNanotubes, CarbonNucleic Acid HybridizationOligonucleotidesDNA, Single-StrandedNanotubes, CarbonOligonucleotides

Identifiers

PMID21258331
PMCPMC3783941
OpenAlexW2135324507

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.