Evidence map›Paper›PMID 21257790›Full record

ArticleAmerican journal of respiratory and critical care medicine2011

ANGPT2 genetic variant is associated with trauma-associated acute lung injury and altered plasma angiopoietin-2 isoform ratio.

Nuala J Meyer, Mingyao Li, Rui Feng, Jonathan Bradfield, Robert Gallop, Scarlett Bellamy, Barry D Fuchs, Paul N Lanken, Steven M Albelda, Melanie Rushefski and 14 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in American journal of respiratory and critical care medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it, 110 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Genetic variation in the prostaglandin E2 pathway is associated with primary graft dysfunction.American journal of respiratory and critical care medicine · 2014
    Trial
  5. Trial
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Angiopoietin-Like Protein 2 Is Increased in Obese Mouse Models of Lung Injury.Computational and mathematical methods in medicine · 2022
    Article
  16. The rs2442598 polymorphism in theArchives of endocrinology and metabolism · 2021
    Article
  17. A hitchhiker's guide through the COVID-19 galaxy.Clinical immunology (Orlando, Fla.) · 2021
    Review
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 7 institutions in 2 countries.

Nuala J MeyerDivision of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA. nuala.meyer@uphs.upenn.edu
Mingyao Li
Rui Feng
Jonathan Bradfield
Robert Gallop
Scarlett Bellamy
Barry D Fuchs
Paul N Lanken
Steven M Albelda
Melanie Rushefski
Richard Aplenc
Helen Abramova
Elena N Atochina-Vasserman
Michael F Beers
Carolyn S Calfee
Mitchell J Cohen
Jean-Francois Pittet
David C Christiani
Grant E O'Keefe
Lorraine B Ware
Addison K May
Mark M Wurfel
Hakon Hakonarson
Jason D Christie
California University of Pennsylvania · USChildren's Hospital of Philadelphia · USUniversity of California, San Francisco · USUniversity of Washington · USVanderbilt University · USHarvard University · USPulmonary and Allergy Associates · US

Funding

Reactive oxygen species and anti-oxidants in ALIP01HL079063 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI ALBELDA, STEVEN MARK · 2005 to 2009
$12.1M
MOLECULAR EPIDEMIOLOGY OF ARDSR01HL060710 · NHLBI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 2000 to 2015
$8.4M
Genetics of primary graft dysfunctionR01HL081619 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D · 2007 to 2011
$3.9M
Career Development for Genomic/Genetic Studies in Lung DiseasesK12HL090021 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PACK, ALLAN I · 2007 to 2012
$2.0M
Midcareer Investigator Award in Patient-Oriented Research in Acute Lung InjuryK24HL103836 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI WARE, LORRAINE B · 2010 to 2020
$1.6M
Gene Polymorphisms, Inflammation and Outcome from TraumaR01GM066946 · NIGMS · UNIVERSITY OF WASHINGTON · PI O'KEEFE, GRANT E · 2003 to 2007
$1.6M
Impact of Cigarette Smoke Exposure on Acute Lung InjuryK23HL090833 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CALFEE, CAROLYN · 2008 to 2012
$761k
Genetic Variation in the ANGPT-TIE Pathway and Risk for Acute Lung InjuryK23HL102254 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MEYER, NUALA JENNINGS · 2010 to 2014
$685k
Mechanism of Traumatic CoagulopathyK08GM085689 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COHEN, MITCHELL · 2008 to 2012
$594k
NHLBI NIH HHS HL060710NHLBI NIH HHS HL079063NHLBI NIH HHS HL081332NHLBI NIH HHS HL081619NHLBI NIH HHS HL090021NHLBI NIH HHS HL090833NHLBI NIH HHS HL102254NHLBI NIH HHS K23 HL090833NHLBI NIH HHS K23 HL102254NHLBI NIH HHS K24 HL103836NHLBI NIH HHS L30 HL097857NHLBI NIH HHS R01 HL081619NIGMS NIH HHS GM066946NIGMS NIH HHS GM085689
6 · The paper itself

Abstract

rationaleAcute lung injury (ALI) acts as a complex genetic trait, yet its genetic risk factors remain incompletely understood. Large-scale genotyping has not previously been reported for ALI.

objectivesTo identify ALI risk variants after major trauma using a large-scale candidate gene approach.

methodsWe performed a two-stage genetic association study. We derived findings in an African American cohort (n = 222) using a cardiopulmonary disease-centric 50K single nucleotide polymorphism (SNP) array. Genotype and haplotype distributions were compared between subjects with ALI and without ALI, with adjustment for clinical factors. Top performing SNPs (P < 10(-4)) were tested in a multicenter European American trauma-associated ALI case-control population (n = 600 ALI; n = 2,266 population-based control subjects) for replication. The ALI-associated genomic region was sequenced, analyzed for in silico prediction of function, and plasma was assayed by ELISA and immunoblot. MEASUREMENTS AND MAIN

resultsFive SNPs demonstrated a significant association with ALI after adjustment for covariates in Stage I. Two SNPs in ANGPT2 (rs1868554 and rs2442598) replicated their significant association with ALI in Stage II. rs1868554 was robust to multiple comparison correction: odds ratio 1.22 (1.06-1.40), P = 0.0047. Resequencing identified predicted novel splice sites in linkage disequilibrium with rs1868554, and immunoblots showed higher proportion of variant angiopoietin-2 (ANG2) isoform associated with rs1868554T (0.81 vs. 0.48; P = 0.038).

conclusionsAn ANGPT2 region is associated with both ALI and variation in plasma angiopoietin-2 isoforms. Characterization of the variant isoform and its genetic regulation may yield important insights about ALI pathogenesis and susceptibility.

Indexed as

Acute Lung InjuryAdultAngiopoietin-2Cohort StudiesEnzyme-Linked Immunosorbent AssayFemaleHaplotypesHumansMaleOdds RatioPolymorphism, Single NucleotideProtein IsoformsRisk FactorsAngiopoietin-2Protein Isoforms

Identifiers

PMID21257790
PMCPMC3114062
OpenAlexW2152198508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.