Evidence map›Paper›PMID 21257746›Full record

ArticleThe Journal of biological chemistry2011

Identification of macrodomain proteins as novel O-acetyl-ADP-ribose deacetylases.

Dawei Chen, Melanie Vollmar, Marianna N Rossi, Claire Phillips, Rolf Kraehenbuehl, Dea Slade, Pawan V Mehrotra, Frank von Delft, Susan K Crosthwaite, Opher Gileadi and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 166 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Poly-ADP-ribosylation dynamics, signaling, and analysis.Environmental and molecular mutagenesis · 2024
    Review
  14. Review
  15. Article
  16. Article
  17. NADNature communications · 2023
    Article
  18. Article
  19. PARP14 is a writer, reader, and eraser of mono-ADP-ribosylation.The Journal of biological chemistry · 2023
    Article
  20. Review

46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Dawei ChenDepartment of Biomolecular Chemistry and Wisconsin Institute for Discovery, University of Wisconsin, Madison, Wisconsin 53706, USA.
Melanie Vollmar
Marianna N Rossi
Claire Phillips
Rolf Kraehenbuehl
Dea Slade
Pawan V Mehrotra
Frank von Delft
Susan K Crosthwaite
Opher Gileadi
John M Denu
Ivan Ahel
University of Manchester · GBUniversity of Oxford · GBCancer Research UK Manchester Institute · GBInserm · FRUniversity of Wisconsin–Madison · USWisconsin Institutes for Discovery · US

Funding

Reversible protein acetylation and sirtuin functionR01GM065386 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2003 to 2022
$7.3M
Molecular mechanisms of histone modification - Alzheimer’s supplement NOT-AG-18-008R37GM059785 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2013 to 2022
$3.7M
Cancer Research UKCIHRNIGMS NIH HHS GM065386NIGMS NIH HHS R01 GM065386NIGMS NIH HHS R37 GM059785Wellcome Trust
6 · The paper itself

Abstract

Sirtuins are a family of protein lysine deacetylases, which regulate gene silencing, metabolism, life span, and chromatin structure. Sirtuins utilize NAD(+) to deacetylate proteins, yielding O-acetyl-ADP-ribose (OAADPr) as a reaction product. The macrodomain is a ubiquitous protein module known to bind ADP-ribose derivatives, which diverged through evolution to support many different protein functions and pathways. The observation that some sirtuins and macrodomains are physically linked as fusion proteins or genetically coupled through the same operon, provided a clue that their functions might be connected. Indeed, here we demonstrate that the product of the sirtuin reaction OAADPr is a substrate for several related macrodomain proteins: human MacroD1, human MacroD2, Escherichia coli YmdB, and the sirtuin-linked MacroD-like protein from Staphylococcus aureus. In addition, we show that the cell extracts derived from MacroD-deficient Neurospora crassa strain exhibit a major reduction in the ability to hydrolyze OAADPr. Our data support a novel function of macrodomains as OAADPr deacetylases and potential in vivo regulators of cellular OAADPr produced by NAD(+)-dependent deacetylation.

Indexed as

Evolution, MolecularEscherichia coliEscherichia coli ProteinsFungal ProteinsHeLa CellsHumansNeurospora crassaProtein Structure, TertiarySirtuinsStaphylococcus aureusEscherichia coli ProteinsFungal ProteinsSirtuins

Identifiers

PMID21257746
PMCPMC3075673
OpenAlexW1970995808

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.