Evidence map›Paper›PMID 21255762›Full record

ArticleAmerican journal of human genetics2011

Loss-of-function mutations of ILDR1 cause autosomal-recessive hearing impairment DFNB42.

Guntram Borck, Atteeq Ur Rehman, Kwanghyuk Lee, Hans-Martin Pogoda, Naseebullah Kakar, Simon von Ameln, Nicolas Grillet, Michael S Hildebrand, Zubair M Ahmed, Gudrun Nürnberg and 32 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 2 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 2 syntheses or guidelines pooled it, 119 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  8. Article
  9. Combined AAV-mediated gene replacement therapy improves auditory function in a mouse model of human DFNB42 deafness.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  10. Analysis of genetic dominance in the UK Biobank.Science (New York, N.Y.) · 2023
    Article
  11. Alternative splicing in shaping the molecular landscape of the cochlea.Frontiers in cell and developmental biology · 2023
    Review
  12. ARNSHL gene identification: past, present and future.Molecular genetics and genomics : MGG · 2022
    Review
  13. Article
  14. Review
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 19 institutions in 5 countries.

Guntram BorckInstitute of Human Genetics, University of Cologne, Cologne, Germany. guntram.borck@uk-koeln.de
Atteeq Ur Rehman
Kwanghyuk Lee
Hans-Martin Pogoda
Naseebullah Kakar
Simon von Ameln
Nicolas Grillet
Michael S Hildebrand
Zubair M Ahmed
Gudrun Nürnberg
Muhammad Ansar
Sulman Basit
Qamar Javed
Robert J Morell
Nabilah Nasreen
A Eliot Shearer
Adeel Ahmad
Kimia Kahrizi
Rehan S Shaikh
Rana A Ali
Shaheen N Khan
Ingrid Goebel
Nicole C Meyer
William J Kimberling
Jennifer A Webster
Dietrich A Stephan
Martin R Schiller
Melanie Bahlo
Hossein Najmabadi
Peter G Gillespie
Peter Nürnberg
Bernd Wollnik
Saima Riazuddin
Richard J H Smith
Wasim Ahmad
Ulrich Müller
Matthias Hammerschmidt
Thomas B Friedman
Sheikh Riazuddin
Suzanne M Leal
Jamil Ahmad
Christian Kubisch
University of Cologne · DEQuaid-i-Azam University · PKUniversity of Iowa · USBalochistan University of Information Technology, Engineering and Management Sciences · PKNational Institutes of Health · USBaylor College of Medicine · USCincinnati Children's Hospital Medical Center · USScripps Research Institute · USUniversity of Social Welfare and Rehabilitation Sciences · IRUniversity of the Punjab · PKBahauddin Zakariya University · PKBoston Children's Hospital · USBoys Town National Research Hospital · USJinnah Postgraduate Medical Center · PKKing Edward Medical University · PKOregon Health & Science University · USTranslational Genomics Research Institute · USUniversity of Nevada, Las Vegas · USWalter and Eliza Hall Institute of Medical Research · AU

Funding

Identification of Genes Causing Syndromic And Nonsyndromic Hearing ImpairmentZIADC000039 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FRIEDMAN, THOMAS · 2009 to 2025
$48.7M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
NONSYNDROMIC HEARING LOSS--A COLLABORATIVE STUDYR01DC002842 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 1996 to 2024
$12.7M
Identification of Nonsyndromic Hearing Impairment GenesR01DC003594 · NIDCD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SUZANNE M LEAL · 2004 to 2026
$7.7M
Identification of Genes Causing Syndromic And Nonsyndromic Hearing ImpairmentZ01DC000039 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FRIEDMAN, THOMAS BAER · 1997 to 2008
$7.2M
Mouse models to study inherited forms of deafnessR01DC007704 · NIDCD · SCRIPPS RESEARCH INSTITUTE, THE · PI MUELLER, ULRICH · 2005 to 2014
$5.0M
GENOTYPING FOR LOCATING HUMAN DISEASE GENESN01HG065403 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID L · 1996 to 2000
$1.7M
SPEECH AND HEARING SCIENCEST32DC000039 · NIDCD · CUNY GRADUATE SCH AND UNIV CTR · PI SCHWARTZ, RICHARD G · 1992 to 2002
$429k
ISOLATION OF NON SYNDROMIC HEARING LOSS GENESR29DC003594 · NIDCD · ROCKEFELLER UNIVERSITY · PI LEAL, SUZANNE MARGARET · 1998 to 2002
$345k
Intramural NIH HHS Z01 DC000039NHGRI NIH HHS N01 HG065403NHGRI NIH HHS N01 HG-65403NIDCD NIH HHS DC000039-14NIDCD NIH HHS DC007704NIDCD NIH HHS DC03594NIDCD NIH HHS R01 DC002842NIDCD NIH HHS R01 DC003594NIDCD NIH HHS R01 DC007704NIDCD NIH HHS R29 DC003594NIDCD NIH HHS T32 DC000039NIGMS NIH HHS T32 GM007337
6 · The paper itself

Abstract

By using homozygosity mapping in a consanguineous Pakistani family, we detected linkage of nonsyndromic hearing loss to a 7.6 Mb region on chromosome 3q13.31-q21.1 within the previously reported DFNB42 locus. Subsequent candidate gene sequencing identified a homozygous nonsense mutation (c.1135G>T [p.Glu379X]) in ILDR1 as the cause of hearing impairment. By analyzing additional consanguineous families with homozygosity at this locus, we detected ILDR1 mutations in the affected individuals of 10 more families from Pakistan and Iran. The identified ILDR1 variants include missense, nonsense, frameshift, and splice-site mutations as well as a start codon mutation in the family that originally defined the DFNB42 locus. ILDR1 encodes the evolutionarily conserved immunoglobulin-like domain containing receptor 1, a putative transmembrane receptor of unknown function. In situ hybridization detected expression of Ildr1, the murine ortholog, early in development in the vestibule and in hair cells and supporting cells of the cochlea. Expression in hair cell- and supporting cell-containing neurosensory organs is conserved in the zebrafish, in which the ildr1 ortholog is prominently expressed in the developing ear and neuromasts of the lateral line. These data identify loss-of-function mutations of ILDR1, a gene with a conserved expression pattern pointing to a conserved function in hearing in vertebrates, as underlying nonsyndromic prelingual sensorineural hearing impairment.

Indexed as

Genetic Predisposition to DiseaseAnimalsChromosome MappingChromosomes, Human, Pair 3Codon, NonsenseConsanguinityEar, InnerFemaleGenes, RecessiveGenetic LinkageGenotypeHearing LossHumansIn Situ HybridizationLod ScoreMaleCodon, NonsenseILDR1 protein, humanReceptors, Cell Surface

Identifiers

PMID21255762
PMCPMC3035704
OpenAlexW2055598155

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.