Evidence map›Paper›PMID 21254193›Full record

ArticleAnnals of neurology2011

Exome sequencing allows for rapid gene identification in a Charcot-Marie-Tooth family.

Gladys Montenegro, Eric Powell, Jia Huang, Fiorella Speziani, Yvonne J K Edwards, Gary Beecham, William Hulme, Carly Siskind, Jeffery Vance, Michael Shy and 1 more

Registry-linked trialAbstract read
In one paragraph

Article in Annals of neurology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01193088 (Genetics of Charcot Marie Tooth Disease), which is not on this map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01193088 recruitingnot on this map

Genetics of Charcot Marie Tooth Disease (CMT) - Modifiers of CMT1A, New Causes of CMT

TypeobservationalSponsorUniversity of IowaRan2010 to 2026Enrolled1,050ConditionsCharcot-Marie-Tooth Disease, Type Ia (Disorder), HMSN
3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 123 citations in OpenAlex.

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  7. Associations of perceived norms with intentions to learn genomic sequencing results: Roles for attitudes and ambivalence.Health psychology : official journal of the Division of Health Psychology, American Psychological Association · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Gladys MontenegroJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, FL 33136, USA.
Eric Powell
Jia Huang
Fiorella Speziani
Yvonne J K Edwards
Gary Beecham
William Hulme
Carly Siskind
Jeffery Vance
Michael Shy
Stephan Züchner
University of Miami · USDr. John T. Macdonald Foundation · USWayne State University · US

Funding

trainingU54NS065712 · NINDS · WAYNE STATE UNIVERSITY · PI SHY, MICHAEL E. · 2009 to 2023
$19.6M
Genomic Studies in Charcot-Marie-Tooth DiseaseR01NS075764 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SHY, MICHAEL E., ZUCHNER, STEPHAN · 2012 to 2016
$3.0M
The Pathophysiology of CMT2A in Cell and Animal ModelsR01NS052767 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI ZUCHNER, STEPHAN · 2006 to 2010
$1.7M
NINDS NIH HHS R01 NS052767NINDS NIH HHS R01NS052767NINDS NIH HHS R01 NS075764NINDS NIH HHS U54 NS065712NINDS NIH HHS U54NS065712
6 · The paper itself

Abstract

objectiveCharcot-Marie-Tooth (CMT) disease comprises a large number of genetically distinct forms of inherited peripheral neuropathies. The relative uniform phenotypes in many patients with CMT make it difficult to decide which of the over 35 known CMT genes are affected in a given patient. Genetic testing decision trees are therefore broadly based on a small number of major subtypes (eg, CMT1, CMT2) and the observed mutation frequency for CMT genes. Since conventional genetic testing is expensive many rare genes are not being tested for at all.

methodsWhole-exome sequencing has recently been introduced as a novel and alternative approach. This method is capable of resequencing a nearly complete set of coding exons in an individual. We performed whole-exome sequencing in an undiagnosed family with CMT.

resultsWithin over 24,000 variants detected in 2 exomes of a CMT family, we identified a nonsynonymous GJB1 (Cx32) mutation. This variant had been reported previously as pathogenic in X-linked CMT families. Sanger sequencing confirmed complete cosegregation in the family. Affected individuals had a marked early involvement of the upper distal extremities and displayed a mild reduction of nerve conduction velocities.

interpretationWe have shown for the first time in a genetically highly heterogeneous dominant disease that exome sequencing is a valuable method for comprehensive medical diagnosis. Further improvements of exon capture design, next-generation sequencing accuracy, and a constant price decline will soon lead to the adoption of genomic approaches in gene testing of Mendelian disease.

Indexed as

ExonsMutationAdolescentAdultCharcot-Marie-Tooth DiseaseFemaleGenetic TestingHumansMalePedigreePhenotype

Identifiers

PMID21254193
PMCPMC3066289
OpenAlexW2112501198

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.