Evidence map›Paper›PMID 21253862›Full record

ArticleVirus genes2011

Comparison of two H1N2 swine influenza A viruses from disease outbreaks in pigs in Sweden during 2009 and 2010.

Giorgi Metreveli, Eva Emmoth, Siamak Zohari, Adám Bálint, Frederik Widén, Shaman Muradrasoli, Per Wallgren, Sándor Belák, Neil Leblanc, Mikael Berg and 1 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Virus genes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Giorgi MetreveliSection of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7036, 750 07, Uppsala, Sweden. Giorgi.Metreveli@bvf.slu.se
Eva Emmoth
Siamak Zohari
Adám Bálint
Frederik Widén
Shaman Muradrasoli
Per Wallgren
Sándor Belák
Neil Leblanc
Mikael Berg
István Kiss

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The influenza A virus subtypes H1N1, H1N2 and H3N2 are prevalent in pig populations worldwide. In the present study, two relatively uncommon swine influenza virus (SIV) H1N2 subtypes, isolated in Sweden in 2009 and 2010, were compared regarding their molecular composition and biological characteristics. The differences regarding markers purportedly related to pathogenicity, host adaptation or replication efficiency. They included a truncated PB1-F2 protein in the earlier isolate but a full length version in the more recent one; differences in the number of haemagglutinin glycosylation sites, including a characteristic human one; and a nuclear export protein with altered export signal. Of particular interest, the NS1 amino acid sequence of swine H1N2-2009 and 2010 has a 'unique or very unusual' PDZ binding domain (RPKV) at the C-terminal of the protein, a motif that has been implicated as a virulence marker. Concerning biological properties, these viruses reached lower titre and showed reduced cytopathogenicity in MDCK cells compared with an avian-like H1N1 isolate A/swine/Lidkoping/1193/2002 belonging to the same lineage as the 2009 and 2010 isolates. The findings should contribute to better understanding of factors related to the survival/extinction of this uncommon reassortant variant.

Indexed as

AnimalsCell LineDisease OutbreaksDogsGenome, ViralGlycosylationHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H1N2 SubtypeNeuraminidaseNucleocapsid ProteinsOrthomyxoviridae InfectionsPhylogenyRNA-Binding ProteinsRNA, ViralSequence Analysis, DNASwedenHemagglutinin Glycoproteins, Influenza VirusINS1 protein, influenza virusNeuraminidaseNP protein, Influenza A virusNucleocapsid ProteinsPB1-F2 protein, Influenza A virusPB2 protein, influenza virusRNA-Binding ProteinsRNA, ViralViral Core ProteinsViral Nonstructural ProteinsViral Proteins

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.