Evidence map›Paper›PMID 21253564›Full record

ArticlePLoS genetics2011

Quaking regulates Hnrnpa1 expression through its 3' UTR in oligodendrocyte precursor cells.

N Ruth Zearfoss, Carina C Clingman, Brian M Farley, Lisa M McCoig, Sean P Ryder

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 59 citations in OpenAlex.

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  11. Autogenous cross-regulation ofGenes & development · 2017
    Article
  12. Article
  13. RNA-binding Protein Quaking StabilizesThe Journal of biological chemistry · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Quaking Regulates Neurofascin 155 Expression for Myelin and Axoglial Junction Maintenance.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

N Ruth ZearfossDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, United States of America.
Carina C Clingman
Brian M Farley
Lisa M McCoig
Sean P Ryder
University of Massachusetts Chan Medical School · US

Funding

RNA recognition by maternal gene silencers in nematodesR01GM081422 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RYDER, SEAN PATRICK · 2008 to 2012
$1.7M
NIGMS NIH HHS GM081422NIGMS NIH HHS R01 GM081422
6 · The paper itself

Abstract

In mice, Quaking (Qk) is required for myelin formation; in humans, it has been associated with psychiatric disease. QK regulates the stability, subcellular localization, and alternative splicing of several myelin-related transcripts, yet little is known about how QK governs these activities. Here, we show that QK enhances Hnrnpa1 mRNA stability by binding a conserved 3' UTR sequence with high affinity and specificity. A single nucleotide mutation in the binding site eliminates QK-dependent regulation, as does reduction of QK by RNAi. Analysis of exon expression across the transcriptome reveals that QK and hnRNP A1 regulate an overlapping subset of transcripts. Thus, a simple interpretation is that QK regulates a large set of oligodendrocyte precursor genes indirectly by increasing the intracellular concentration of hnRNP A1. Together, the data show that hnRNP A1 is an important QK target that contributes to its control of myelin gene expression.

Indexed as

3' Untranslated RegionsGene Expression RegulationAlternative SplicingAnimalsBase SequenceCell DifferentiationCell LineConserved SequenceExonsHeterogeneous Nuclear Ribonucleoprotein A1Heterogeneous-Nuclear Ribonucleoprotein Group A-BHumansMiceMyelin-Associated GlycoproteinOligodendrogliaOligonucleotide Array Sequence Analysis3' Untranslated RegionsHeterogeneous Nuclear Ribonucleoprotein A1Heterogeneous-Nuclear Ribonucleoprotein Group A-BhnRNPA1 protein, humanHnrnpa1 protein, mouseHnrnpa1 protein, ratMyelin-Associated GlycoproteinRNA-Binding ProteinsRNA, Small Interfering

Identifiers

PMID21253564
PMCPMC3017110
OpenAlexW2077905161

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.