ArticleBioinformatics (Oxford, England)2011
Dalliance: interactive genome viewing on the web.
Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
69 citing papers in PubMed, 1 synthesis or guideline pooled it.
- TIGER: The gene expression regulatory variation landscape of human pancreatic islets.Cell reports · 2021Pooled it
- Developing pangenomes for large and complex plant genomes and their representation formats.Journal of advanced research · 2025Review
- Epigenetic and transcriptional regulations prime cell fate before division during human pluripotent stem cell differentiation.Nature communications · 2023Article
- igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV).Bioinformatics (Oxford, England) · 2023Article
- An Interactive View of Glycosylation.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.IEEE transactions on visualization and computer graphics · 2022Article
- SilencerDB: a comprehensive database of silencers.Nucleic acids research · 2021Article
- iSheep: an Integrated Resource for Sheep Genome, Variant and Phenotype.Frontiers in genetics · 2021Article
- InsectOR-Webserver for sensitive identification of insect olfactory receptor genes from non-model genomes.PloS one · 2021Article
- Epiviz File Server: Query, transform and interactively explore data from indexed genomic files.Bioinformatics (Oxford, England) · 2020Article
- A decade of advances in transposon-insertion sequencing.Nature reviews. Genetics · 2020Review
- LogoJS: a Javascript package for creating sequence logos and embedding them in web applications.Bioinformatics (Oxford, England) · 2020Article
- Genome Dashboards: Framework and Examples.Biophysical journal · 2020Article
- EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysis.BMC genomics · 2020Article
- MosaicBase: A Knowledgebase of Postzygotic Mosaic Variants in Noncancer Disease-related and Healthy Human Individuals.Genomics, proteomics & bioinformatics · 2020Article
- PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants.Database : the journal of biological databases and curation · 2020Article
- Visualization tools for human structural variations identified by whole-genome sequencing.Journal of human genetics · 2020Review
- Cram-JS: reference-based decompression in node and the browser.Bioinformatics (Oxford, England) · 2019Article
- The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid.PLoS pathogens · 2019Article
- PAVOOC: designing CRISPR sgRNAs using 3D protein structures and functional domain annotations.Bioinformatics (Oxford, England) · 2019Article
9 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
summaryDalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. AVAILABILITY AND IMPLEMENTATION: Dalliance runs entirely within your web browser, and relies on existing DAS server infrastructure. Browsers for several mammalian genomes are available at http://www.biodalliance.org/, and the use of DAS means you can add your own data to these browsers. In addition, the source code (Javascript) is available under the BSD license, and is straightforward to install on your own web server and embed within other documents.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.