Evidence map›Paper›PMID 21251613›Full record

ArticleCancer cell2011

Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.

Wei Xu, Hui Yang, Ying Liu, Ying Yang, Ping Wang, Se-Hee Kim, Shinsuke Ito, Chen Yang, Pu Wang, Meng-Tao Xiao and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,742 papers.

0numbers the graph read from it
0cells of the map it votes in
1,742citing papers in PubMed
84.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,742 citing papers in PubMed, 2,803 citations in OpenAlex.

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  12. Nuclear IDH3A Drives Transcriptional Programs in Melanoma via the YBX1-JUN/FOS Axis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  13. Article
  14. Article
  15. Tuning epigenetics to enhance cancer virotherapy.Acta pharmaceutica Sinica. B · 2026
    Review
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  18. Article
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1,682 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 2 countries.

Wei XuState Key Laboratory of Genetic Engineering, School of Life Sciences, Shanghai Medical School, Fudan University, Shanghai 20032, China.
Hui Yang
Ying Liu
Ying Yang
Ping Wang
Se-Hee Kim
Shinsuke Ito
Chen Yang
Pu Wang
Meng-Tao Xiao
Li-xia Liu
Wen-qing Jiang
Jing Liu
Jin-ye Zhang
Bin Wang
Stephen Frye
Yi Zhang
Yan-hui Xu
Qun-ying Lei
Kun-Liang Guan
Shi-min Zhao
Yue Xiong
Shanghai Medical College of Fudan University · CNUniversity of North Carolina at Chapel Hill · USChinese Academy of Sciences · CNFudan University · CN

Funding

The Physiological Function and Regulation of INK4 GenesR01CA068377 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MARZLUFF, WILLIAM F. · 1995 to 2021
$6.5M
Investigating DNA repair vulnerabilities in oncometabolite producing cancersF31CA260794 · NCI · YALE UNIVERSITY · PI NORONHA, KATELYN · 2021 to 2023
$122k
Howard Hughes Medical InstituteNCI NIH HHS F31 CA260794NCI NIH HHS R01 CA068377
6 · The paper itself

Abstract

IDH1 and IDH2 mutations occur frequently in gliomas and acute myeloid leukemia, leading to simultaneous loss and gain of activities in the production of α-ketoglutarate (α-KG) and 2-hydroxyglutarate (2-HG), respectively. Here we demonstrate that 2-HG is a competitive inhibitor of multiple α-KG-dependent dioxygenases, including histone demethylases and the TET family of 5-methlycytosine (5mC) hydroxylases. 2-HG occupies the same space as α-KG does in the active site of histone demethylases. Ectopic expression of tumor-derived IDH1 and IDH2 mutants inhibits histone demethylation and 5mC hydroxylation. In glioma, IDH1 mutations are associated with increased histone methylation and decreased 5-hydroxylmethylcytosine (5hmC). Hence, tumor-derived IDH1 and IDH2 mutations reduce α-KG and accumulate an α-KG antagonist, 2-HG, leading to genome-wide histone and DNA methylation alterations.

Indexed as

5-MethylcytosineAmino Acid SubstitutionAnimalsBinding, CompetitiveBiocatalysisCaenorhabditis elegansCaenorhabditis elegans ProteinsCatalytic DomainCell Line, TumorCytosineDioxygenasesDNA-Binding ProteinsEndostatinsF-Box ProteinsGene ExpressionGlioma5-hydroxymethylcytosine5-Methylcytosinealpha-hydroxyglutarateCaenorhabditis elegans ProteinsCytosineDioxygenasesDNA-Binding ProteinsEGLN1 protein, humanEndostatinsF-Box ProteinsGlutaratesHIF1A protein, humanHistone DemethylasesHistonesHomeodomain ProteinsHoxA proteinHypoxia-Inducible Factor 1, alpha SubunitHypoxia-Inducible Factor-Proline DioxygenasesIDH1 protein, humanIDH2 protein, humanIsocitrate DehydrogenaseJMJD-1.2 protein, C elegansJumonji Domain-Containing Histone DemethylasesKDM2A protein, humanKetoglutaric AcidsMixed Function OxygenasesOxalatesoxalomalic acidOxidoreductases, N-DemethylatingProcollagen-Proline DioxygenaseProto-Oncogene ProteinsTET1 protein, humanTET2 protein, human

Identifiers

PMID21251613
PMCPMC3229304
OpenAlexW2131860315

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.