ArticlePlant cell reports2011
Genetic and molecular analysis of a purple sheath somaclonal mutant in japonica rice.
Article in Plant cell reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 51 citations in OpenAlex.
- Genetic analysis and molecular mapping of the purple leaf sheath in barley (Hordeum vulgare).The plant genome · 2025Article
- Identification and functional marker development of SbPLSH1 conferring purple leaf sheath in sorghum.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- OsLSC6 Regulates Leaf Sheath Color and Cold Tolerance in Rice Revealed by Metabolite Genome Wide Association Study.Rice (New York, N.Y.) · 2024Article
- Transcription factor encoding gene OsC1 regulates leaf sheath color through anthocyanidin metabolism in Oryza rufipogon and Oryza sativa.BMC plant biology · 2024Article
- DhMYB22 and DhMYB60 regulate pigment intensity and floral organ shape in Dendrobium hybrid.Annals of botany · 2022Article
- Genome-Wide Association Study of Pericarp Color in Rice Using Different Germplasm and Phenotyping Methods Reveals Different Genetic Architectures.Frontiers in plant science · 2022Article
- A functional chromogen gene C from wild rice is involved in a different anthocyanin biosynthesis pathway in indica and japonica.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Recent Insights into Anthocyanin Pigmentation, Synthesis, Trafficking, and Regulatory Mechanisms in Rice (Biomolecules · 2021Review
- The Purple Leaf (Plants (Basel, Switzerland) · 2020Article
- Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- The bHLH transcription factor PPLS1 regulates the color of pulvinus and leaf sheath in foxtail millet (Setaria italica).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Repurposing of Anthocyanin Biosynthesis for Plant Transformation and Genome Editing.Frontiers in genome editing · 2020Article
- Mapping and Identifying a Candidate GeneInternational journal of molecular sciences · 2019Article
- The C-S-A gene system regulates hull pigmentation and reveals evolution of anthocyanin biosynthesis pathway in rice.Journal of experimental botany · 2018Article
- Article
- Genetic and Evolutionary Analysis of Purple Leaf Sheath in Rice.Rice (New York, N.Y.) · 2016Article
- Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.Current genomics · 2016Article
- Genetic dissection of black grain rice by the development of a near isogenic line.Breeding science · 2014Article
- De novo genetic variation revealed in somatic sectors of single Arabidopsis plants.F1000Research · 2013Article
- Identification of an active Mutator-like element (MULE) in rice (Oryza sativa).Molecular genetics and genomics : MGG · 2012Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Natural and artificially induced mutants have provided valuable resources for plant genetic studies and crop improvement. In this study, we investigated the genetic and molecular basis of the purple sheath trait in a somaclonal mutant Z418, which was regenerated from a green sheath rice variety C418 through tissue culture. The purple sheath trait in Z418 was heritable and stable based on our 10 years of evaluation. Genetic analysis revealed that the purple sheath trait of the mutant was controlled by a single dominant gene. To map the gene, we scored 89 polymorphic SSRs markers in a F(2) population of 232 plants derived from a cross between Z418 and HX-3, an indica variety with green sheath trait. The gene was initially mapped to the short arm of chromosome 6 between two SSR markers, RPM5 and RM402, with a genetic distance of 1.1 and 10.3 cM, respectively. Thirty-one SSR and indel markers located within the target region were further used to fine-map the gene to a 153-kb interval between two SSR markers (RPM8 and RPM11). The OsC1 gene, which locates within the region and encodes a MYB family transcription factor, was chosen as the candidate gene controlling the purple sheath trait in Z418. Sequencing analysis revealed that OsC1 gene and its transcript in Z418 was 34 bp longer than that in C418. The possible mechanisms for the gene mutation, the developmental and tissue-specific expression of purple anthocyanin pigmentation in Z418, were finally discussed.
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