Evidence map›Paper›PMID 21248746›Full record

ArticleEuropean journal of human genetics : EJHG2011

Congenital muscular dystrophy type 1D (MDC1D) due to a large intragenic insertion/deletion, involving intron 10 of the LARGE gene.

Nigel F Clarke, Svetlana Maugenre, Aurélie Vandebrouck, J Andoni Urtizberea, Tobias Willer, Rachel A Peat, Françoise Gray, Céline Bouchet, Hiroshi Manya, Sandrine Vuillaumier-Barrot and 5 more

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In one paragraph

Article in European journal of human genetics : EJHG, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. Guideline
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  7. Science advances · 2022
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  13. LARGE, an intellectual disability-associated protein, regulates AMPA-type glutamate receptor trafficking and memory.Proceedings of the National Academy of Sciences of the United States of America · 2018
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 4 countries.

Nigel F ClarkeInserm, U956, Faculté de Médecine Pierre et Marie Curie, Paris, France.
Svetlana Maugenre
Aurélie Vandebrouck
J Andoni Urtizberea
Tobias Willer
Rachel A Peat
Françoise Gray
Céline Bouchet
Hiroshi Manya
Sandrine Vuillaumier-Barrot
Tamao Endo
Eliane Chouery
Kevin P Campbell
André Mégarbané
Pascale Guicheney
Sorbonne Université · FRAssistance Publique – Hôpitaux de Paris · FRHoward Hughes Medical Institute · USInserm · FRTokyo Metropolitan Institute of Gerontology · JPFondation Jérôme-Lejeune · FRHôpital Lariboisière · FRHôpital Marin de Hendaye · FRSaint Joseph University · LB

Funding

Therapeutic Potential of ESC-Derived Myogenic PrecursorsU54NS053672 · NINDS · UNIVERSITY OF IOWA · PI CAMPBELL, KEVIN P. · 2005 to 2019
$22.0M
Howard Hughes Medical InstituteMedical Research CouncilNINDS NIH HHS 1U54NS053672NINDS NIH HHS U54 NS053672
6 · The paper itself

Abstract

Mutation of the LARGE gene is the rarest of the six known genetic causes of α-dystroglycanopathy. We report further a family with MDC1D due to a complex genomic rearrangement that was not apparent on standard sequencing of LARGE. Two sisters in a consanguineous family had moderate mental retardation and cerebellar malformations, together with dystrophic changes and markedly reduced α-dystroglycan glycosylation staining on muscle biopsy. There was homozygous linkage to the LARGE locus but sequencing of LARGE coding regions was normal. Analysis of LARGE cDNA showed an abnormal sequence inserted between exons 10 and 11, in most of the transcripts, predicted to introduce a premature stop codon. The abnormal sequence mapped to a spliced EST (DA935254) of unknown function, normally located at 100 kb centromeric of LARGE on chromosome 22q12.3. Quantitative PCR analysis of the EST and adjacent regions showed twice the normal copy number in patients' genomic DNA samples, consistent with a large intra-chromosomal duplication inserted into intron 10 of LARGE in a homozygous state. This insertion was associated with deletion of a central region of intron 10, but the exact break points of the deletion/duplication were not found, suggesting that an even more complex rearrangement may have occurred. The exact function of LARGE, a golgi protein, remains uncertain. POMT and POMGnT enzyme activities were normal in patients' lymphoblast cells, suggesting that defects in LARGE do not affect the initiation of O-mannosyl glycans.

Indexed as

Base SequenceChildChild, PreschoolChromosome DuplicationCodon, NonsenseDystroglycansExonsFemaleHumansINDEL MutationIntellectual DisabilityIntronsMannosyltransferasesMuscular DystrophiesN-AcetylglucosaminyltransferasesRNA SplicingCodon, NonsenseDystroglycansLARGE1 protein, humanMannosyltransferasesN-Acetylglucosaminyltransferasesprotein O-mannose beta-1,2-N-acetylglucosaminyltransferaseprotein O-mannosyltransferase

Identifiers

PMID21248746
PMCPMC3060325
OpenAlexW2008013035

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.