Evidence map›Paper›PMID 21248048›Full record

ArticleJournal of virology2011

Reappraisal of the relationship between the HIV-1-protective single-nucleotide polymorphism 35 kilobases upstream of the HLA-C gene and surface HLA-C expression.

Tumena W Corrah, Nilu Goonetilleke, Jakub Kopycinski, Steven G Deeks, Myron S Cohen, Persephone Borrow, Andrew McMichael, Simon Brackenridge

Abstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Genetic interplay between HLA-C and MIR148A in HIV control and Crohn disease.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Pooled it
  2. Trial
  3. Review
  4. Instability of the HLA-E peptidome of HIV presents a major barrier to therapeutic targeting.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Journal of ophthalmology · 2018
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Impact of the PolymorphismJournal of immunology research · 2017
    Article
  18. Article
  19. Allorecognition of HLA-C Mismatches by CD8Frontiers in immunology · 2016
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tumena W CorrahWeatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom.
Nilu Goonetilleke
Jakub Kopycinski
Steven G Deeks
Myron S Cohen
Persephone Borrow
Andrew McMichael
Simon Brackenridge

Funding

Medical Research Council MC_U137884177PHS HHS A1067854Wellcome TrustWellcome Trust 081799/Z/06/Z
6 · The paper itself

Abstract

Previous studies have found an association between a single-nucleotide polymorphism 35 kb upstream of the HLA-C locus (-35 SNP), HLA-C expression, and HIV-1 set point viral loads. We show that the difference in HLA-C expression across -35 SNP genotypes can be attributed primarily to the very low expression of a single allelic product, HLA-Cw7, which is a common HLA type. We suggest that association of the -35 SNP and HIV-1 load manifests as a result of linkage disequilibrium of this polymorphism with both favorable and unfavorable HLA-C and -B alleles.

Indexed as

Gene ExpressionPolymorphism, Single NucleotideRegulatory Elements, TranscriptionalHIV-1HLA-C AntigensHumansLinkage DisequilibriumViral LoadHLA-C Antigens

Identifiers

PMID21248048
PMCPMC3067890

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.