Evidence map›Paper›PMID 21247880›Full record

ArticleNucleic acids research2011

Identification of a novel epigenetic regulatory region within the pluripotency associated microRNA cluster, EEmiRC.

Purushothama R Tata, Nageswara R Tata, Michael Kühl, Ioan O Sirbu

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Super-enhancer omics in stem cell.Molecular cancer · 2024
    Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. microRNAs: important regulators of stem cells.Stem cell research & therapy · 2017
    Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Purushothama R TataInstitute for Biochemistry and Molecular Biology, Albert-Einstein-Allee 11, 89081 Ulm, Germany.
Nageswara R Tata
Michael Kühl
Ioan O Sirbu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The miR-290 cluster is expressed in embryonic stem cells (ESCs) and is important for the maintenance of pluripotency, but little is known about the mechanisms regulating the early embryonic microRNA cluster (EEmiRC) expression. Here we report the identification of a 332-bp intragenic enhancer (IE) able to modulate the transcription of the mouse EEmiRC locus, presumably through binding of transcription modulators like Oct3/4, Sox2 and CTCF. This IE also contains a CpG island showing a differential pattern of DNA and histone methylation marks during differentiation of ESCs, which places EEmiRC in a novel regulatory feedback loop with DNA methylases. Deletion of IE significantly reduced the transcription of the EEmiRC, further proving the importance of this region in regulating the expression of EEmiRC.

Indexed as

Enhancer Elements, GeneticEpigenesis, GeneticAnimalsCCCTC-Binding FactorCell DifferentiationCells, CulturedEmbryonic Stem CellsMiceMicroRNAsOctamer Transcription FactorsPluripotent Stem CellsRepressor ProteinsSOXB1 Transcription FactorsCCCTC-Binding FactorCtcf protein, mouseMicroRNAsOctamer Transcription FactorsRepressor ProteinsSOXB1 Transcription Factors

Identifiers

PMID21247880
PMCPMC3089473

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.