ArticleMolecular biology reports2011
Analysis of gene expression by ESTs from suppression subtractive hybridization library in Chenopodium album L. under salt stress.
Article in Molecular biology reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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8 citing papers in PubMed, 14 citations in OpenAlex.
- An insight into salt stress tolerance mechanisms of Chenopodium album.Environmental science and pollution research international · 2017Article
- Making Plants Break a Sweat: the Structure, Function, and Evolution of Plant Salt Glands.Frontiers in plant science · 2017Review
- Overexpression of a Plasma Membrane-LocalizedFrontiers in plant science · 2017Article
- A novel gene SbSI-2 encoding nuclear protein from a halophyte confers abiotic stress tolerance in E. coli and tobacco.PloS one · 2014Article
- Identification of early response genes to salt stress in roots of melon (Cucumis melo L.) seedlings.Molecular biology reports · 2013Article
- Differential transcript accumulation in chickpea during early phases of compatible interaction with a necrotrophic fungus Ascochyta rabiei.Molecular biology reports · 2012Article
- A novel salt-inducible gene SbSI-1 from Salicornia brachiata confers salt and desiccation tolerance in E. coli.Molecular biology reports · 2012Article
- Identification of biotic and abiotic stress up-regulated ESTs in Gossypium arboreum.Molecular biology reports · 2012Article
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To identify genes expression in Chenopodium album exposed to NaCl stress and screen ESTs related to salt stress, a subtractive suppression hybridization (SSH) library of C. album under salt stress was constructed in the present study. Random EST sequencing produced 825 high-quality ESTs with GenBank ID GE746311-GE747007, which had 301 bp of average size and were clustered into 88 contigs and 550 singletons. They were classified into 12 categories according to their function annotations. 635 ESTs (76.97%) showed similarities to gene sequences in the non-redundancy database, while 190 ESTs (23.03%) showed low or no similarities. The transcriptional profiles of 56 ESTs randomly selected from 347 unknown or novel ESTs of SSH library under varying NaCl concentration and at different time points were analyzed. The results indicated that a high proportion of tested ESTs were activated by salt stress. Four in 56 ESTs responded to NaCl were also enhanced in expression level when exposed to ABA and PEG stresses. The above four ESTs were validated by northern blotting which was consistent with the results of RT-PCR. The results suggested that genes corresponded to these ESTs might be involved in stress response or regulation. The complete sequences and detailed function of these ESTs need to be further studied.
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