Evidence map›Paper›PMID 21244846›Full record

ArticleBiophysical journal2011

Separating instability from aggregation propensity in γS-crystallin variants.

William D Brubaker, J Alfredo Freites, Kory J Golchert, Rebecca A Shapiro, Vasilios Morikis, Douglas J Tobias, Rachel W Martin

Abstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

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  19. Protein refractive index increment is determined by conformation as well as composition.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

William D BrubakerDepartment of Molecular Biology and Biochemistry, University of California, Irvine, USA.
J Alfredo Freites
Kory J Golchert
Rebecca A Shapiro
Vasilios Morikis
Douglas J Tobias
Rachel W Martin

Funding

Project 3: Structural Studies of Voltage-Gated Potassium Channels as FunctionP01GM086685 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI WORCESTER, DAVID · 2009 to 2013
$6.7M
Solid-state NMR methods for investigating native and aggregated eye lens proteinsR01EY021514 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI MARTIN, RACHEL WAGNER · 2011 to 2022
$2.8M
NEI NIH HHS R01 EY021514NIGMS NIH HHS GM86685NIGMS NIH HHS P01 GM086685
6 · The paper itself

Abstract

Molecular dynamics (MD) simulations, circular dichroism (CD), and dynamic light scattering (DLS) measurements were used to investigate the aggregation propensity of the eye-lens protein γS-crystallin. The wild-type protein was investigated along with the cataract-related G18V variant and the symmetry-related G106V variant. The MD simulations suggest that local sequence differences result in dramatic differences in dynamics and hydration between these two apparently similar point mutations. This finding is supported by the experimental measurements, which show that although both variants appear to be mostly folded at room temperature, both display increased aggregation propensity. Although the disease-related G18V variant is not the most strongly destabilized, it aggregates more readily than either the wild-type or the G106V variant. These results indicate that γS-crystallin provides an excellent model system for investigating the role of dynamics and hydration in aggregation by locally unfolded proteins.

Indexed as

Molecular Dynamics SimulationPoint MutationCataractCircular DichroismCrystallinsgamma-CrystallinsHumansProtein ConformationProtein DenaturationProtein FoldingCrystallinsgamma-Crystallins

Identifiers

PMID21244846
PMCPMC3021659

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.