Evidence map›Paper›PMID 21243513›Full record

ArticleFunctional & integrative genomics2011

A nonsense mutation in a putative sulphate transporter gene results in low phytic acid in barley.

Hongxia Ye, Xiao-Qi Zhang, Sue Broughton, Sharon Westcott, Dianxing Wu, Reg Lance, Chengdao Li

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Plants (Basel, Switzerland) · 2020
    Article
  5. Phytic Acid and Transporters: What Can We Learn fromPlants (Basel, Switzerland) · 2020
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
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  14. STAS domain structure and function.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology · 2011
    Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Hongxia YeState Key Lab of Rice Biology and Key Lab of the Ministry of Agriculture for Nuclear-Agricultural Sciences, Zhejiang University, Hangzhou, 310029, People's Republic of China.
Xiao-Qi Zhang
Sue Broughton
Sharon Westcott
Dianxing Wu
Reg Lance
Chengdao Li
Government of Western Australia · AUAgriculture and Food · AUChina National Rice Research Institute · CNMurdoch University · AUState Key Laboratory of Rice Biology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Low phytic acid grains can provide a solution to dietary micronutrient deficiency and environmental pollution. A low phytic acid 1-1 (lpa1-1) barley mutant was identified using forward genetics and the mutant gene was mapped to chromosome 2HL. Comparative genomic analysis revealed that the lpa1-1 gene was located in the syntenic region of the rice Os-lpa-MH86-1 gene on chromosome 4. The gene ortholog of rice Os-lpa-MH86-1 (designated as HvST) was isolated from barley using polymerase chain reaction and mapped to chromosome 2HL in a doubled haploid population of Clipper×Sahara. The results demonstrate the collinearity between the rice Os-lpa-MH86-1 gene and the barley lpa1-1 region. Sequence analysis of HvST revealed a single base pair substitution (C→T transition) in the last exon of the gene in lpa1-1 (M422), which resulted in a nonsense mutation. These results will facilitate our understanding of the molecular mechanisms controlling the low phytic acid phenotype and assist in the development of a diagnostic marker for the selection of the lpa1-1 gene in barley.

Indexed as

Anion Transport ProteinsBase SequenceChromosome MappingCloning, MolecularCodon, NonsenseDNA, PlantGenome, PlantHordeumMolecular Sequence DataOryzaPhytic AcidPlant ProteinsPolymerase Chain ReactionRNA, PlantSequence Homology, Nucleic AcidSulfatesAnion Transport ProteinsCodon, NonsenseDNA, PlantPhytic AcidPlant ProteinsRNA, PlantSulfates

Identifiers

PMID21243513
OpenAlexW2030163683

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.