Evidence map›Paper›PMID 21242321›Full record

ArticleMolecular plant2011

Proteomics analysis reveals post-translational mechanisms for cold-induced metabolic changes in Arabidopsis.

Tian Li, Shou-Ling Xu, Juan A Oses-Prieto, Sunita Putil, Peng Xu, Rui-Ju Wang, Kathy H Li, David A Maltby, Liz-He An, Alma L Burlingame and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Starch Trek: The Search for Yield.Frontiers in plant science · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. A vision for better health: mass spectrometry imaging for clinical diagnostics.Clinica chimica acta; international journal of clinical chemistry · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Tian LiKey Laboratory of Arid and Grassland Agroecology of Ministry of Education, School of Life Sciences, Lanzhou University, Lanzhou 730000, China.
Shou-Ling Xu
Juan A Oses-Prieto
Sunita Putil
Peng Xu
Rui-Ju Wang
Kathy H Li
David A Maltby
Liz-He An
Alma L Burlingame
Zhi-Ping Deng
Zhi-Yong Wang
University of California, San Francisco · USCarnegie Institution for Science · USDepartment of Plant Biology · USHebei Normal University · CNLanzhou University · CN

Funding

YEAST THREONINE &SERINE KINASESP41RR001614 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1985 to 2011
$24.1M
PURCHASE OF LTQ FT-ICR HYBRID MASS SPECTROMETER: (HEI) PROTEOMICSS10RR019934 · NCRR · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI BURLINGAME, ALMA L · 2004 to 2004
$1.0M
PURCHASE OF Q TOF MASS SPECTROMETERS10RR012961 · NCRR · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI JAMES, THOMAS L · 1998 to 1998
–
NCRR NIH HHS P41 RR001614NCRR NIH HHS P41RR001614NCRR NIH HHS P41RR019934NCRR NIH HHS RR012961NCRR NIH HHS S10 RR019934
6 · The paper itself

Abstract

Cold-induced changes of gene expression and metabolism are critical for plants to survive freezing. Largely by changing gene expression, exposure to a period of non-freezing low temperatures increases plant tolerance to freezing-a phenomenon known as cold acclimation. Cold also induces rapid metabolic changes, which provide instant protection before temperature drops below freezing point. The molecular mechanisms for such rapid metabolic responses to cold remain largely unknown. Here, we use two-dimensional difference gel electrophoresis (2-D DIGE) analysis of sub-cellular fractions of Arabidopsis thaliana proteome coupled with spot identification by tandem mass spectrometry to identify early cold-responsive proteins in Arabidopsis. These proteins include four enzymes involved in starch degradation, three HSP100 proteins, several proteins in the tricarboxylic acid cycle, and sucrose metabolism. Upon cold treatment, the Disproportionating Enzyme 2 (DPE2), a cytosolic transglucosidase metabolizing maltose to glucose, increased rapidly in the centrifugation pellet fraction and decreased in the soluble fraction. Consistent with cold-induced inactivation of DPE2 enzymatic activity, the dpe2 mutant showed increased freezing tolerance without affecting the C-repeat binding transcription factor (CBF) transcriptional pathway. These results support a model that cold-induced inactivation of DPE2 leads to rapid accumulation of maltose, which is a cold-induced compatible solute that protects cells from freezing damage. This study provides evidence for a key role of rapid post-translational regulation of carbohydrate metabolic enzymes in plant protection against sudden temperature drop.

Indexed as

Cold TemperatureArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantProteomicsTwo-Dimensional Difference Gel ElectrophoresisArabidopsis Proteins

Identifiers

PMID21242321
PMCPMC3063518
OpenAlexW2049152393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.