Evidence map›Paper›PMID 21242282›Full record

ArticleMolecular & cellular proteomics : MCP2011

Multiplexed homogeneous proximity ligation assays for high-throughput protein biomarker research in serological material.

Martin Lundberg, Stine Buch Thorsen, Erika Assarsson, Andrea Villablanca, Bonnie Tran, Nick Gee, Mick Knowles, Birgitte Sander Nielsen, Eduardo González Couto, Roberto Martin and 11 more

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

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  19. Plasma Proteomics to Identify Drug Targets for Ischemic Heart Disease.Journal of the American College of Cardiology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Martin LundbergOlink Bioscience, Dag Hammarskjölds väg 54A, 75183 Uppsala Sweden.
Stine Buch Thorsen
Erika Assarsson
Andrea Villablanca
Bonnie Tran
Nick Gee
Mick Knowles
Birgitte Sander Nielsen
Eduardo González Couto
Roberto Martin
Olle Nilsson
Christian Fermer
Jörg Schlingemann
Ib Jarle Christensen
Hans-Jorgen Nielsen
Björn Ekström
Claes Andersson
Mats Gustafsson
Nils Brunner
Jan Stenvang
Simon Fredriksson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A high throughput protein biomarker discovery tool has been developed based on multiplexed proximity ligation assays in a homogeneous format in the sense of no washing steps. The platform consists of four 24-plex panels profiling 74 putative biomarkers with sub-pm sensitivity each consuming only 1 μl of human plasma sample. The system uses either matched monoclonal antibody pairs or the more readily available single batches of affinity purified polyclonal antibodies to generate the target specific reagents by covalently linking with unique nucleic acid sequences. These paired sequences are united by DNA ligation upon simultaneous target binding forming a PCR amplicon. Multiplex proximity ligation assays thereby converts multiple target analytes into real-time PCR amplicons that are individually quantified using microfluidic high capacity qPCR in nano liter volumes. The assay shows excellent specificity, even in multiplex, by its dual recognition feature, its proximity requirement, and most importantly by using unique sequence specific reporter fragments on both antibody-based probes. To illustrate the potential of this protein detection technology, a pilot biomarker research project was performed using biobanked plasma samples for the detection of colorectal cancer using a multivariate signature.

Indexed as

AdultAgedAged, 80 and overAntigens, Tumor-Associated, CarbohydrateBiomarkers, TumorCarcinoembryonic AntigenColorectal NeoplasmsEnzyme-Linked Immunosorbent AssayFemaleHumansInterleukin-8MaleMiddle AgedMolecular Diagnostic TechniquesMultivariate AnalysisSecretory Leukocyte Peptidase InhibitorAntigens, Tumor-Associated, CarbohydrateBiomarkers, TumorCA 242 antigenCarcinoembryonic AntigenInterleukin-8Secretory Leukocyte Peptidase InhibitorSLPI protein, humanTissue Inhibitor of Metalloproteinase-1Vascular Endothelial Growth Factor A

Identifiers

PMID21242282
PMCPMC3069344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.