Evidence map›Paper›PMID 21240482›Full record

ArticleMicrobial ecology2011

Distinctive responses of metabolically active microbiota to acidification in a thermophilic anaerobic digester.

Masateru Akuzawa, Tomoyuki Hori, Shin Haruta, Yoshiyuki Ueno, Masaharu Ishii, Yasuo Igarashi

Abstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 99 citations in OpenAlex.

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  6. A Review of the Processes, Parameters, and Optimization of Anaerobic Digestion.International journal of environmental research and public health · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Masateru AkuzawaDepartment of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Tomoyuki Hori
Shin Haruta
Yoshiyuki Ueno
Masaharu Ishii
Yasuo Igarashi
The University of Tokyo · JPKajima Corporation (Japan) · JPNational Institute of Advanced Industrial Science and Technology · JPTokyo Metropolitan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acidification is one of the most common and serious problems inducing process failure in anaerobic digesters. The production of volatile fatty acids (VFAs) mainly triggers acidic shock. However, little is known about the bacteria involved in the processes of acidogenic metabolism, such as fermentation and reductive acetogenesis. Here, the metabolic responses of a methanogenic community to the acidification and resulting process deterioration were investigated using transcriptional profiling of both the 16S rRNA and formyltetrahydrofolate synthetase (FTHFS) genes. The 16S rRNA-based analyses demonstrated that the dynamic shift of bacterial populations was closely correlated with reactor performance, especially with VFA accumulation levels. The pH drop accompanied by an increase in VFAs stimulated the metabolic activation of an uncultured Chloroflexi subphylum I bacterium. The subphylum has been characterized as a fermentative carbohydrate degrader using culture- and molecular-based ecophysiological assays. At the beginning of VFA accumulation, FTHFS genes were expressed; the transcripts were derived from phylogenetically predicted homoacetogens, suggesting that reductive acetogenesis was operated by hitherto unidentified bacteria. When acetate concentrations were high, the FTHFS expression ceased and Thermoanaerobacterium aciditolerans proliferated selectively. This thermoacidophilic bacterium would play a decisive role in acetate production via fermentative metabolism. The results of this study reveal for the first time that an uncultured Chloroflexi, T. aciditolerans, and novel homoacetogens were metabolically associated with acidic shock and subsequent VFA accumulation in an anaerobic digester.

Indexed as

AcidsAnaerobiosisBioreactorsChloroflexiDNA, BacterialFatty Acids, VolatileFormate-Tetrahydrofolate LigaseGene Expression ProfilingGene LibraryGenes, BacterialHydrogen-Ion ConcentrationPhylogenyPolymorphism, Restriction Fragment LengthRNA, Ribosomal, 16SSequence Analysis, DNAWaste Disposal, FluidAcidsDNA, BacterialFatty Acids, VolatileFormate-Tetrahydrofolate LigaseRNA, Ribosomal, 16S

Identifiers

PMID21240482
OpenAlexW2039770147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.