Evidence map›Paper›PMID 21234568›Full record

ArticleJournal of mathematical biology2011

A theoretical analysis of filament length fluctuations in actin and other polymers.

Jifeng Hu, Hans G Othmer

Abstract read
In one paragraph

Article in Journal of mathematical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jifeng HuSchool of Mathematics, University of Minnesota, Minneapolis, MN 55455, USA. jfhu@math.umn.edu
Hans G Othmer

Funding

DYNAMIC PATTERN IN CHEMICALLY-REACTING SYSTEMSR01GM029123 · NIGMS · UNIVERSITY OF UTAH · PI OTHMER, HANS G · 1985 to 2018
$5.3M
NIGMS NIH HHS GM29123NIGMS NIH HHS R01 GM029123
6 · The paper itself

Abstract

Control of the structure and dynamics of the actin cytoskeleton is essential for cell motility and for maintaining the structural integrity of cells. Central to understanding the control of these features is an understanding of the dynamics of actin filaments, first as isolated filaments, then as integrated networks, and finally as networks containing higher-order structures such as bundles, stress fibers and acto-myosin complexes. It is known experimentally that single filaments can exhibit large fluctuations, but a detailed understanding of the transient dynamics involved is still lacking. Here we first study stochastic models of a general system involving two-monomer types that can be analyzed completely, and then we report stochastic simulations on the complete actin model with three monomer types. We systematically examine the transient behavior of filament length dynamics so as to gain a better understanding of the time scales involved in reaching a steady state. We predict the lifetime of a cap of one monomer type and obtain the mean and variance of the survival time of a cap at the filament end, which together determine the filament length fluctuations.

Indexed as

Models, BiologicalActin CytoskeletonActinsAdenosine DiphosphateAdenosine TriphosphateAlgorithmsBiopolymersComputer SimulationDiffusionHydrolysisKineticsStochastic ProcessesActinsAdenosine DiphosphateAdenosine TriphosphateBiopolymers

Identifiers

PMID21234568
PMCPMC3099255

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.