Evidence map›Paper›PMID 21234345›Full record

ArticleArchaea (Vancouver, B.C.)2010

The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments.

Stefan Spring, Carmen Scheuner, Alla Lapidus, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Feng Chen, Matt Nolan and 25 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Archaea (Vancouver, B.C.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  5. Review
  6. Comparative Genomics of the GenusFrontiers in microbiology · 2019
    Article
  7. Article
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  12. Comparative genomics of biotechnologically important yeasts.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Taxonomy of halophilic Archaea: current status and future challenges.Extremophiles : life under extreme conditions · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 6 institutions in 2 countries.

Stefan SpringDSMZ-German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany. ssp@dsmz.de
Carmen Scheuner
Alla Lapidus
Susan Lucas
Tijana Glavina Del Rio
Hope Tice
Alex Copeland
Jan-Fang Cheng
Feng Chen
Matt Nolan
Elizabeth Saunders
Sam Pitluck
Konstantinos Liolios
Natalia Ivanova
Konstantinos Mavromatis
Athanasios Lykidis
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D Jeffries
Lynne Goodwin
John C Detter
Thomas Brettin
Manfred Rohde
Markus Göker
Tanja Woyke
Jim Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk
Joint Genome Institute · USLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DELos Alamos National Laboratory · USLawrence Berkeley National Laboratory · USOak Ridge National Laboratory · USHelmholtz Centre for Infection Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methanohalophilus mahii is the type species of the genus Methanohalophilus, which currently comprises three distinct species with validly published names. Mhp. mahii represents moderately halophilic methanogenic archaea with a strictly methylotrophic metabolism. The type strain SLP(T) was isolated from hypersaline sediments collected from the southern arm of Great Salt Lake, Utah. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,012,424 bp genome is a single replicon with 2032 protein-coding and 63 RNA genes and part of the Genomic Encyclopedia of Bacteria and Archaea project. A comparison of the reconstructed energy metabolism in the halophilic species Mhp. mahii with other representatives of the Methanosarcinaceae reveals some interesting differences to freshwater species.

Indexed as

Genome, ArchaealSequence Analysis, DNADNA, ArchaealEnergy MetabolismGeologic SedimentsMetabolic Networks and PathwaysMethanosarcinaceaeMolecular Sequence DataUtahDNA, Archaeal

Identifiers

PMID21234345
PMCPMC3017947
OpenAlexW2012191822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.