ArticleBMC genomics2011
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).
Article in BMC genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
82 citing papers in PubMed, 150 citations in OpenAlex.
- Transcriptional Analysis of Tissues in Tartary Buckwheat Seedlings Under IAA Stimulation.Genes · 2024Article
- NBLAST: a graphical user interface-based two-way BLAST software with a dot plot viewer.Genomics & informatics · 2022Article
- Inflorescence Transcriptome Sequencing and Development of New EST-SSR Markers in Common Buckwheat (Plants (Basel, Switzerland) · 2022Article
- Transcriptome and metabolome analyses reveal the key genes related to grain size of big grain mutant in Tartary Buckwheat (Frontiers in plant science · 2022Article
- Beyond the Cereal Box: Breeding Buckwheat as a Strategic Crop for Human Nutrition.Plant foods for human nutrition (Dordrecht, Netherlands) · 2021Review
- Comparative Transcriptomics and Gene Knockout Reveal Virulence Factors ofJournal of fungi (Basel, Switzerland) · 2021Article
- Integrating Omics and Gene Editing Tools for Rapid Improvement of Traditional Food Plants for Diversified and Sustainable Food Security.International journal of molecular sciences · 2021Review
- Mapping QTLs for 1000-grain weight and genes controlling hull type using SNP marker in Tartary buckwheat (Fagopyrum tataricum).BMC genomics · 2021Article
- High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat,Frontiers in plant science · 2021Article
- Transcriptome and Comparative Chloroplast Genome Analysis ofFrontiers in genetics · 2021Article
- Transcriptome analysis identified the mechanism of synergy between sethoxydim herbicide and a mycoherbicide on green foxtail.Scientific reports · 2020Article
- Article
- Stimulation of adventitious root formation by the oligosaccharin OSRG at the transcriptome level.Plant signaling & behavior · 2020Article
- Healthy and Resilient Cereals and Pseudo-Cereals for Marginal Agriculture: Molecular Advances for Improving Nutrient Bioavailability.Frontiers in genetics · 2020Review
- Revisiting the versatile buckwheat: reinvigorating genetic gains through integrated breeding and genomics approach.Planta · 2019Review
- FtMYB16 interacts with Ftimportin-α1 to regulate rutin biosynthesis in tartary buckwheat.Plant biotechnology journal · 2019Article
- Article
- Molecular Mechanism of Xylogenesis in Moso Bamboo (Polymers · 2018Article
- Generation and classification of transcriptomes in twoPlant diversity · 2018Article
- Jasmonate-responsive MYB factors spatially repress rutin biosynthesis in Fagopyrum tataricum.Journal of experimental botany · 2018Article
22 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
7 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundTranscriptome sequencing data has become an integral component of modern genetics, genomics and evolutionary biology. However, despite advances in the technologies of DNA sequencing, such data are lacking for many groups of living organisms, in particular, many plant taxa. We present here the results of transcriptome sequencing for two closely related plant species. These species, Fagopyrum esculentum and F. tataricum, belong to the order Caryophyllales--a large group of flowering plants with uncertain evolutionary relationships. F. esculentum (common buckwheat) is also an important food crop. Despite these practical and evolutionary considerations Fagopyrum species have not been the subject of large-scale sequencing projects.
resultsNormalized cDNA corresponding to genes expressed in flowers and inflorescences of F. esculentum and F. tataricum was sequenced using the 454 pyrosequencing technology. This resulted in 267 (for F. esculentum) and 229 (F. tataricum) thousands of reads with average length of 341-349 nucleotides. De novo assembly of the reads produced about 25 thousands of contigs for each species, with 7.5-8.2× coverage. Comparative analysis of two transcriptomes demonstrated their overall similarity but also revealed genes that are presumably differentially expressed. Among them are retrotransposon genes and genes involved in sugar biosynthesis and metabolism. Thirteen single-copy genes were used for phylogenetic analysis; the resulting trees are largely consistent with those inferred from multigenic plastid datasets. The sister relationships of the Caryophyllales and asterids now gained high support from nuclear gene sequences.
conclusions454 transcriptome sequencing and de novo assembly was performed for two congeneric flowering plant species, F. esculentum and F. tataricum. As a result, a large set of cDNA sequences that represent orthologs of known plant genes as well as potential new genes was generated.
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